Xxan012611.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754470.1:13346815-13350384[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.63 13 7.0 1.3 1 23 692 715 692 715 0.93 2 13 0.11 2.2 9.4 4.8 1 23 773 796 773 796 0.97 3 13 1 20 6.4 1.2 1 23 804 826 804 826 0.99 4 13 4.2e-05 0.00087 20.1 1.5 2 23 829 850 828 850 0.97 5 13 0.15 3 9.0 2.7 1 21 856 876 856 878 0.94 6 13 0.00042 0.0086 17.0 4.1 2 23 885 907 884 907 0.93 7 13 0.001 0.021 15.8 3.0 2 23 944 966 943 966 0.96 8 13 0.34 7.1 7.8 0.1 3 23 983 1002 981 1002 0.96 9 13 9.4e-05 0.0019 19.0 0.9 1 20 1008 1027 1008 1030 0.93 10 13 0.00035 0.0072 17.2 0.4 1 23 1038 1060 1038 1060 0.99 11 13 0.038 0.78 10.8 7.3 1 23 1066 1088 1066 1088 0.98 12 13 0.00079 0.016 16.1 6.4 1 23 1094 1116 1094 1116 0.98 13 13 0.032 0.65 11.1 8.2 1 23 1122 1144 1122 1145 0.95
Sequence Information
- Coding Sequence
- ATGGATGCAAATAGTTTAGTGTGCCCAGTGTGTACATTATATTTACGTGCTGGTATAACCTTAGAAGACCACCTTCAAACACATCCCAAAGATAAGGTTATAGAAGCGTTAGTTGCCGTCGCATCGAATCTAAATAAAAATGCCAGTACACAGTTGGCTCCAGTTCAGTCTATGCAGTCGAGGCACGGTCCTTCTTATAATGTTTACCCACCGCAAATTAATAACATATATGCACAAGCACCTTGGCACCAAAACAGGGATAATATGCAATCTACTTCTGTAATAATCCCTGTTCAACAAACTCCTTTTGCTCCTATCACAAATAATCAGTCAATATTTTACCAACAATACACATCCAACACAAATACAGGTCAAGGTTTTTCTGTTCCTCCATCAATGGTTCCTCAGTATTTCACTGTATCACCTGAGCTAAATCAACAAAACATGTTTGCTAATCCATACGTGTATCAACAACAACCATTTCAAATAATACCTAACCCAGTTATCCCACCAATTGTGTCCAGAACTGTAGAAATTACACCCCTACCGAGATATGTGCCCAACCCAACTCCCGTGAAAATAACCGAAATTGCTACATCTACCAAACATCAAAACACTTCTGTTAAAACGTCAAATTCCGAAAACAGGGGTGCTGAAATTTCAGAACCAAGCATTGCAACCAGTATTATGTCGACAACAATCGTCCCTGTCACGACTCAATCAACAGATATTCTGACTGTTGAGCAGCAAAGTGTTTCTGTCACATCCAATTCGTTTTCAAAGAATGATTTGTGCACGAGTTCTGATACAGCAGTTGCTGATAAACTTGTACAAAGCAATATAACAGAAAGCGGTGAACAAAGTGAGATTGTCCAAGACGATTGTATAGAAATACCAGATGAAGACTGCAATGAACATGCTGGAGCATCACAAACTATTGACCTAACAGGTAATGAATTACAAAATGTTGAAAACGAACCAGAGTCAAATAAAACTAGCGAGCACTTAGAGGAAACACGTGAAGAACAAAAAGTACTTGTATTAGAAGAACCAATAGAAGACAAAGTTGAAAACTTGGCATTAGTGGATGATGACAATGAGAAACCAGAAGAACTATTAGAAGATGACCAAAAAGCAGATGAAATAATGGAGCCAAAGTCGGTTGAACCTGAAGGATCAGTTGAACCTGAAGGATGTGAGTTTGATTTATCTGACGATTCATATGATGAGGATGAATTTAGTAAAGACAGTATAGATATTGTTGATGAATTCGGCAAACACATTGACGAAATGGaacgtataaaaaatgaaaaaaacgacGAACTATTTGAAGTACAAGCGAGTTCAAGCGGTATCACAATATTACAAAACGATATCATTAATTTACCAAtgtgttcaataaatttaactgaaaaagaaaaagatCTGAAAATATTGGAGTCAGGTTTGtcgaatgaattaaaaaaacaagaagaTGAAGAAATGGTGCATCTGGAACAAAGTGAAGAATATAATTCTTGGATcgataataaagttaatgaaaaTGTGCCCAACTCAGGAAATTCCATGGATGTTCATGATGTAGAATCAATGAATGTTTTAGAATTTGACGGCATGCAATTAATTTTACCTGGCAATTTAATTAATACCAATTCGGTAGCAACAGAAAGAAATTTTCAGTATGTTCAACAGCATTTGAGAGAAGATTCACCTGTACTATTAAATATAGGTGATATAGATAATGATGATAGCAAATCAAAATTAGAACCTGTCGAAGAGAGCACTTCACATGATAGTTTAAATATTAGAGCAGATGAGAGAATGCCACCACATGGAGAACTATCCGAACAAGAAAGCAATGGTGCCAATGATGCCACTTGGGGAAAAaTATTTCAGGAAGGCAGTTCCGGTGTATCTGCGTCTTACGATTTGTTGGCGAGAGAAAGTTGGGAAGCATCCGACTGTTCCGATACAGAAGTACCGCCTCTGCAGAGTCGCGTGCCTCCAAAAGAACAATACAGTCCGGAACCCGAAACAGATCTTCCATCTATATCGATAACACCGCCGCGCCATTACAAATGTACATTGTGCGGTGAAGGATTCCCGTGTCCCAAGGAACGACGTGTGCATCAAACAAAAGAACATAGTGTAGAAGTTTCAATAAAAACGGTGAAGAAGAATtcacaagaaattgaaattaaatctcAAAAAGTCGAAATAAAAGTTGACGATCCTTTCAATGAAAGTGTTGAAAACAATTTGGAACAGGACGAGGTGAAAATTAAACTTGAAAATGttagaattaaaattgaaactttCAAGTGTCAAATATGTActtcaaattttaaatcgatgAAACTTCTTCTGAGGCATCATAAAAGTTCGCACAGCGGAGAACCACCACCGAAGTACAAGTGCGACACCTGCAGCGATCAGTTTTCATTAGATTCCGAATACTCTCTACATTTAAAAACTCATCCTCTCGAGTGTAACATGTGTGGTAAAATGTTCAAACGCCGGCAGAGCATTAAACTTCACATCCGGCGCCATCTAGGAATAAAGCCTTATAAGTGTACTGCATGCAGTAAGGCATTCATAACCAAACAAAAATTGAGTGAACACGTGAACTGTCATACTGGAAATTCTCCGCTTAAATGTAATATGTGCGATGAAAAGTTCAAAAGacattcaaatttaattcaacatcGTAATTTTCGTCATTTACACATAAAGAAGAAAGTGAAGAACTATATTTGTGAATGCGGTGAAATTTGTCAttctgtaaagaaatttttatggCATAAGGAAACTCACGAAACCAAACCGAAATCTTGTATGAAATGCAATCAGAAATTTATACACGCCGCGAGTTTAACGCGTCATATTCGTCGATCGCACAATCGAAGTTACGTTCCGGACGCGACGAGGTCGAAAGAAAACGTGAACTGTCCAGTTTGCaatgacatatttttaaaagcgTCGCTAGAAGCACACTTGCGGACACACGACGGCCTGAGGCCTTATCAATGCGGCATTTGCAATAAAGATTTCACGACAAAATGGAATTTAAAAGTTCACAAGTGGACACATGCGGCTCGTTCGTCCAAaccgtttaaatgtaaattgtgtAACGGTGCTTTTATAAGACAGACCGATTACATTGCTCACATGAATTCCCATCGGAAGGTACGTCCATACACGTGTAATTATTGCGGGTGTCAGTTTATACGTAAATACAATTGCCAACGTCACGTTAAAGAACACGAACAAAGCAAACAGCACGAGTGCaccatttgtaaaaagtttttccaTAGGTCATATTATCTGAAAGAACATTTGCGCGTTCACAGCGGCATGAGACCGCACTCTTGTCATATATGCGGCAAGACTTCGGCCACTAAATCCAACCATAATAAACACGTGCGCATACATCATGCAAGGGAACCGATGGTGGCTGAAGGATAA
- Protein Sequence
- MDANSLVCPVCTLYLRAGITLEDHLQTHPKDKVIEALVAVASNLNKNASTQLAPVQSMQSRHGPSYNVYPPQINNIYAQAPWHQNRDNMQSTSVIIPVQQTPFAPITNNQSIFYQQYTSNTNTGQGFSVPPSMVPQYFTVSPELNQQNMFANPYVYQQQPFQIIPNPVIPPIVSRTVEITPLPRYVPNPTPVKITEIATSTKHQNTSVKTSNSENRGAEISEPSIATSIMSTTIVPVTTQSTDILTVEQQSVSVTSNSFSKNDLCTSSDTAVADKLVQSNITESGEQSEIVQDDCIEIPDEDCNEHAGASQTIDLTGNELQNVENEPESNKTSEHLEETREEQKVLVLEEPIEDKVENLALVDDDNEKPEELLEDDQKADEIMEPKSVEPEGSVEPEGCEFDLSDDSYDEDEFSKDSIDIVDEFGKHIDEMERIKNEKNDELFEVQASSSGITILQNDIINLPMCSINLTEKEKDLKILESGLSNELKKQEDEEMVHLEQSEEYNSWIDNKVNENVPNSGNSMDVHDVESMNVLEFDGMQLILPGNLINTNSVATERNFQYVQQHLREDSPVLLNIGDIDNDDSKSKLEPVEESTSHDSLNIRADERMPPHGELSEQESNGANDATWGKIFQEGSSGVSASYDLLARESWEASDCSDTEVPPLQSRVPPKEQYSPEPETDLPSISITPPRHYKCTLCGEGFPCPKERRVHQTKEHSVEVSIKTVKKNSQEIEIKSQKVEIKVDDPFNESVENNLEQDEVKIKLENVRIKIETFKCQICTSNFKSMKLLLRHHKSSHSGEPPPKYKCDTCSDQFSLDSEYSLHLKTHPLECNMCGKMFKRRQSIKLHIRRHLGIKPYKCTACSKAFITKQKLSEHVNCHTGNSPLKCNMCDEKFKRHSNLIQHRNFRHLHIKKKVKNYICECGEICHSVKKFLWHKETHETKPKSCMKCNQKFIHAASLTRHIRRSHNRSYVPDATRSKENVNCPVCNDIFLKASLEAHLRTHDGLRPYQCGICNKDFTTKWNLKVHKWTHAARSSKPFKCKLCNGAFIRQTDYIAHMNSHRKVRPYTCNYCGCQFIRKYNCQRHVKEHEQSKQHECTICKKFFHRSYYLKEHLRVHSGMRPHSCHICGKTSATKSNHNKHVRIHHAREPMVAEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01511557;
- 90% Identity
- iTF_01511557;
- 80% Identity
- -