Basic Information

Insect: Xanthostigma xanthostigma
Gene Symbol: -
Assembly: GCA_963575645.1
Location: OY754471.1:21233124-21236795[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.012 0.25 12.4 0.5 1 23 95 117 95 117 0.95

2 12 0.48 9.8 7.4 0.7 1 20 247 266 247 268 0.93

3 12 0.0098 0.2 12.7 0.2 2 23 274 295 273 295 0.96

4 12 8e-05 0.0016 19.3 0.5 1 23 337 359 337 359 0.98

5 12 0.042 0.87 10.7 3.9 1 19 365 383 365 387 0.91

6 12 0.024 0.48 11.5 2.0 1 23 394 416 394 416 0.98

7 12 8.4e-06 0.00017 22.3 1.3 2 23 427 448 426 448 0.97

8 12 0.00015 0.0031 18.4 1.7 1 23 519 541 519 541 0.99

9 12 5.3e-05 0.0011 19.8 1.1 2 23 546 567 546 567 0.94

10 12 0.07 1.4 10.0 0.3 1 23 573 595 573 595 0.97

11 12 1.4e-05 0.00028 21.7 0.9 1 23 601 623 601 623 0.99

12 12 0.0019 0.04 14.9 1.0 1 23 629 652 629 652 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.012	0.25	12.4	0.5	1	23	95	117	95	117	0.95
2	12	0.48	9.8	7.4	0.7	1	20	247	266	247	268	0.93
3	12	0.0098	0.2	12.7	0.2	2	23	274	295	273	295	0.96
4	12	8e-05	0.0016	19.3	0.5	1	23	337	359	337	359	0.98
5	12	0.042	0.87	10.7	3.9	1	19	365	383	365	387	0.91
6	12	0.024	0.48	11.5	2.0	1	23	394	416	394	416	0.98
7	12	8.4e-06	0.00017	22.3	1.3	2	23	427	448	426	448	0.97
8	12	0.00015	0.0031	18.4	1.7	1	23	519	541	519	541	0.99
9	12	5.3e-05	0.0011	19.8	1.1	2	23	546	567	546	567	0.94
10	12	0.07	1.4	10.0	0.3	1	23	573	595	573	595	0.97
11	12	1.4e-05	0.00028	21.7	0.9	1	23	601	623	601	623	0.99
12	12	0.0019	0.04	14.9	1.0	1	23	629	652	629	652	0.91

Sequence Information

Coding Sequence: ATGACGTTAATAAACCTTTCCGATAGACGACACTGTTATGATAAAAGGGCTTGGGGGACGTCCATGTTATacaaaaacaatttttctgaaAGTTATGCAACAAACGAAAACGATGCACCAGCTGTAAAATACATTCGTATAAAAACCGAACCGATCATCAAAGAAGAACCTCTACGGACCGGATATGATAATCAGAGCAACGaaaacgtaaaaataattaaaattgatttcGATGAGAATGTTTGTAAACAAGAAATCGGTAGTGAATATGTGAACCCGAtatatttatgtcaaaaatgtgAGACGACATTCGATAACGAGGAACAATTTGTCGATCATTTGAATCTGCACGAAGACAGTTCGGCCGGCAGAAAAAACTCATCGGTTTTAGGCAGCACTTCCGCAATTATCGATGCTTACAATGAACAAgacaatataaattatttaaacgcggACCAAAATGCCAACAAATTTAGTAACGAATCAAAGTTTCAAATCAAACCGTATACAAAAAGTGGAAAGAAACTTTCCGAGCAGCCTAGTATTATAAAGATTGAAAATTACAGCGCAGATTTTAGACACGAAATGCTCGATCATTTATCGGCCGGTTTGAAGAACGGAAAAGGTAACATTGAAATCGTTAACGTCAACACCGAACCCCAGAATGCTACCAGCTCTGACGATATGGACGTAACGTACGAATCGACCGAAGTAGAAAACAACGTTCTcggtattatttttgaatgtgaatttTGTTTATTGCGATTTGAAAATAAATCCGATTGGCTCAACCACGAACACAGCTATGTCGGCGATTTGATGTGTCAGATATGCGGTCAACTTTACGAGAAGCAGTCGAATCTTGACGAGCACTTGCAACAGCACGAACGAGCCGTTTCGTTGACGTACGAAAACGAAGAAGAAATACATCTGATCCAAGATCAACCGATGGAGAATTCGTACGGAAAAACTGTAAAAGATTCGAATCAGAACGATCGAACGACTTTTTTTACGTGTTCCGAGTGTTCGGAAATATTTAACTCTAAAGTAGCTCTTACATCTCATCGAAGAATACACAAGAGGAACGTTGTGTATTCGTGTGAATTATGCggcaaaaagtttaaaaacgaGTACCGAATGAAGAATCATTGTCTTCTGCACGATTATTACAATTCTCGATACGAATGTCACCCGTGCAACTTAATTTTCAGTGATAAAATTTCGTATAAGAATCATTTAAATTATCATATGGGTAAAAATTCAATGTTGAAAATATTAACTTGCGAAAtatgttttaaagtttttacgaGAACGTCGAATTTAAACAGTCATTTAACGACTCATATAAAAGATCATTATTGTATCGTTTGCTGCTGTAGTTTTATTACACAGCTACGGCTAGAAAATCACATGTCGGCTCATTCGAACGAAGACGTCGCCGCAGCTAAAGAAGCGCCTCAAGTCGTCGGTTGTTCATATGAGAATTGTGGCCAAATGTTTCCGTCTCGGTTACAGTGTTACGAACATAAGAAAATACATCTCGAATTGATTGAATATCAGTGCGACATTTGTTCCAAAAAATATCCGAAATTTTCCCAGTTGGTTACTCATCAAAAAAGTCACGACGGTGACAATGTctgtaaaatttgtaataaaatgtttaaaaatcaaaaatcgttaaaagaACATCTTGTTTTGCATACCGACGAGAAGAAGTATCAGTGCGatgtttgttttataaaattcaggtGGCAAAGTGGTTTAGCGAGTCACAAGAGTGTTCATACGAATGTCCGTAAGTATACTTGTGGGGTGTGTAAGAGGGGCTTCGCGCGATCGAACTATTTAAAGGAACATTTAAGAACGCACCGGAAAGAAAAACCGTTCGATTGTAAAGTTTGTGGGCGCTGTTTTGTTCAAACGAGTATACTTCGGAATCATATGGGACTTGTGCATAGAACGTGTCAAATATGTAAATTGATGATTGGCAACAGACggcaaattaaaatacatatgtGGAAAAATCATCCCGAATTTGCAAAATCTACAGGCATTAAACCAGTAAAAGTggatacaaaatgtttaaaaaatgaataa
Protein Sequence: MTLINLSDRRHCYDKRAWGTSMLYKNNFSESYATNENDAPAVKYIRIKTEPIIKEEPLRTGYDNQSNENVKIIKIDFDENVCKQEIGSEYVNPIYLCQKCETTFDNEEQFVDHLNLHEDSSAGRKNSSVLGSTSAIIDAYNEQDNINYLNADQNANKFSNESKFQIKPYTKSGKKLSEQPSIIKIENYSADFRHEMLDHLSAGLKNGKGNIEIVNVNTEPQNATSSDDMDVTYESTEVENNVLGIIFECEFCLLRFENKSDWLNHEHSYVGDLMCQICGQLYEKQSNLDEHLQQHERAVSLTYENEEEIHLIQDQPMENSYGKTVKDSNQNDRTTFFTCSECSEIFNSKVALTSHRRIHKRNVVYSCELCGKKFKNEYRMKNHCLLHDYYNSRYECHPCNLIFSDKISYKNHLNYHMGKNSMLKILTCEICFKVFTRTSNLNSHLTTHIKDHYCIVCCCSFITQLRLENHMSAHSNEDVAAAKEAPQVVGCSYENCGQMFPSRLQCYEHKKIHLELIEYQCDICSKKYPKFSQLVTHQKSHDGDNVCKICNKMFKNQKSLKEHLVLHTDEKKYQCDVCFIKFRWQSGLASHKSVHTNVRKYTCGVCKRGFARSNYLKEHLRTHRKEKPFDCKVCGRCFVQTSILRNHMGLVHRTCQICKLMIGNRRQIKIHMWKNHPEFAKSTGIKPVKVDTKCLKNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -