Xxan011188.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754469.1:14211593-14213902[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 6.3e-05 0.0013 19.6 3.6 2 23 162 184 161 184 0.96 2 9 0.017 0.35 11.9 2.2 1 23 227 250 227 250 0.97 3 9 4.7 97 4.2 5.7 1 23 250 269 250 269 0.80 4 9 1.4e-05 0.00029 21.6 1.5 1 23 275 297 275 297 0.95 5 9 2.1e-05 0.00042 21.1 0.3 1 23 303 325 303 325 0.98 6 9 0.00024 0.0048 17.8 1.7 1 23 331 354 331 354 0.96 7 9 4.4e-05 0.00091 20.1 1.5 2 23 361 382 360 382 0.96 8 9 1.1e-05 0.00023 22.0 5.6 1 23 388 410 388 410 0.98 9 9 0.00022 0.0045 17.9 0.4 1 22 416 437 416 440 0.90
Sequence Information
- Coding Sequence
- ATGAAAGCTGATGAACTAAACAGCATTTGCCGTTCTTGCATGTCCGAAAATTCAGAAATGGTATCGGTTTTCGACTGCGACGAGTCAGAAAAGTCGACGTACAATCACGCTGACATGTTGATGGCGTTCACTTCCGTCCAGataTTGTCAGGCGATGGAATGCCGGATCAAGTCTGTTTAGATTGCGTGAGTCAAATTAAGCAGTgctatttattcaaattaaaatgtgaaaattcggataatcgttTACGGGAAAGAATATCGGTGGGATCGAGCCAAGAATGTTCCACTACGAACGCCGACGGTGTACTCGTTAAAATCGAAGAAGACGATGAAGTGAAACCCGATATTCTTTCCGATTTCAGTAATGATTTTTATCATGACTATGACGAACCTCCAGAAGAACAAGATGTCAACAATAAAAACCGAATAGGAAAAAAGTCTTTAGACAGTCAGAAGTCAAAGATAGTGAAGAATGGACTTAAATGTGAAATTTGCCATAAAAAATTTCGCTACGAACGCAATTGGACTAAGCACATGAACATAAAGCACAGTTCGAAAAGTCATGCGCGCTACGAAAAGTATTCTAATAATGTCTTAAAATCACGAAATGTGTCGAAGAGCAAAGAAACAAGCCAAGGAAACGATGGAAAAGAAATGAAGAAAATCGAAAAAGTACACAAATGTGATAAGTGCAAGTGTAGGTTCGCTGAAGAACTACAATTAAATAATCATATTATCAAAAGACATTTTTGCACAATATGTTCAAAGAAATTCACACATTTAGATGTCCATTtaagGAGTCATACGGGAGAAAAAGACTTTTTGTGTTCGATATGCGGCAGACGATTCAACCAGCGTTCTAATTACGATCAGCACATGTTACGTCATAGCGGGATTAGATCTTTTGTCTGCGAGTTCTGTCAGATGAGCTTTATTACCAAGGGCAATTTAGCGTCCCATCTACTGACACATTCAGATGAGAAGAATTTCCAATGCGACATTTGCAGTTCAACATTCAACAGATCGGATACTCTCCACAGACACAGAGAAATCGCACACTTTGGTAAGAAAAAATGGGAATGCGACGTGTGCACCAAAACATTCTCGCAATCACATTCCCTCGTCAAACATAAACTGATACATACAGGGGAGAAGCCTCATAAATGTAACTTCTGCGAGAAAAAATTCACACAAAAGACCACGCTGACAGCACATCTTAGAACACACACGGGCGACAAGCCCTACATCTGTAATGTCTGTGGCCAGGCTTTCGGACAACGATCTACGCTCAGATCACACAAAGAAAAAGAAAGTCATTTATAG
- Protein Sequence
- MKADELNSICRSCMSENSEMVSVFDCDESEKSTYNHADMLMAFTSVQILSGDGMPDQVCLDCVSQIKQCYLFKLKCENSDNRLRERISVGSSQECSTTNADGVLVKIEEDDEVKPDILSDFSNDFYHDYDEPPEEQDVNNKNRIGKKSLDSQKSKIVKNGLKCEICHKKFRYERNWTKHMNIKHSSKSHARYEKYSNNVLKSRNVSKSKETSQGNDGKEMKKIEKVHKCDKCKCRFAEELQLNNHIIKRHFCTICSKKFTHLDVHLRSHTGEKDFLCSICGRRFNQRSNYDQHMLRHSGIRSFVCEFCQMSFITKGNLASHLLTHSDEKNFQCDICSSTFNRSDTLHRHREIAHFGKKKWECDVCTKTFSQSHSLVKHKLIHTGEKPHKCNFCEKKFTQKTTLTAHLRTHTGDKPYICNVCGQAFGQRSTLRSHKEKESHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01511440;
- 90% Identity
- iTF_01511440;
- 80% Identity
- -