Xxan021413.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- ZFY
- Assembly
- GCA_963575645.1
- Location
- OY754474.1:16120422-16123328[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8e-05 0.0016 19.3 1.1 2 23 175 196 174 196 0.97 2 11 7.4e-05 0.0015 19.4 2.2 2 23 205 226 204 226 0.97 3 11 0.096 2 9.6 0.3 1 23 232 255 232 255 0.97 4 11 0.02 0.42 11.7 0.2 2 23 261 282 260 282 0.98 5 11 0.00068 0.014 16.3 1.3 1 23 286 308 286 308 0.98 6 11 8.1e-05 0.0017 19.2 3.9 1 23 313 336 313 336 0.97 7 11 0.0097 0.2 12.7 2.3 1 23 370 392 370 392 0.98 8 11 0.0014 0.029 15.4 1.1 3 23 403 423 402 423 0.99 9 11 6.6e-05 0.0013 19.5 1.0 1 23 429 451 429 451 0.98 10 11 0.00028 0.0058 17.5 3.0 1 23 457 479 457 479 0.98 11 11 2.3e-06 4.7e-05 24.1 1.4 1 23 485 507 485 507 0.97
Sequence Information
- Coding Sequence
- ATGGATGAAGAAAGAAGAcccgatttttcaaaaatttgccgcACTTGTCTTTTACAGTTTAAGAATATGAGTTCCATATTTGCACAAAACATATCAGAAATGATAATATTCTGTACTAATATCAAGaTCAACAAAGGCGACGATCTACCAAAACAGATATGCTCCAAATGTATtaaagaagtaaaaacttcgtaccattttaaattaaaatcagaaaaatctgaagagctgttacataaatacatacaaGACGAcgagaaacaattgaaaaacacTTCACTTGTTTCCGTTATAAAAACAGAAAACTATCAGTCGGAAGCAACGGCAGATAACGATTGTTTCGGCAGTACAATAAAGCcggaaataacttcaaaaaccCAGGAAGAATTCGACGATGGCgacagttttaaaaattcatcgaGAGAAACGACACCCGACAGGCAATACGAAGAAGCCGTTACCGAACCGAACACATCcggcaaattaaaaaaagaaatcaaacgGGGCGAAAGCAGCAGCTGGAAATGTGAAATTTGCGGTAAAGAACTATACAACAAGCATTCGGTTCAGCGACACATGATCACACATCCCGAATATCGGACGGATCCAGTTCAGTGCTCCGTCTGTAAGAAGCAATTTTTCGACAAGCAATACTTAACGAAACACATGTTGCGTCACAAGGGCGAAAAACGATACTCGTGCGAATTTTGCGAGAGGGGTTTTTACGAGCTGACACCGTTGGCGAACCACGTCAAGAAAAGCCACGATGTAAAACCGGTTCAATGTGGCGTTTGTCAGAAAGAGTTGACGCTGCAACTTCAACTCGATCTGCATATGAGAACACACAGAGACGAATACATCTGCAATGTGTGCGGGAAGCAGGCGACGTCGCTGAAGGCCCTGTGTTCGCACAGGCGAATGCACAACACCAATCCGTTTCCGTGTACGCAATGCGACAGgagatttaaatataaatacagtctTCATGTCCACATCAAGAGTTCTCATATGGgcatcaaaaagaaaaaagacgtcTGCAATCTGTGCGGATTCGAAGTGCTGAATCTAAACAATCACATGTTGCGCAGACATGCGACAGAGAAACCACACAAATGCGATCGCTGTGATCAAGCGTTCGCTAAAAAATGGATACTGAAACAGCACCAGAAAATGCACACGGACGAACCGAGACAACAGAAAGAGTTGTGTACGATTTGCGGCAAGAAGTTGATGAATTACACAAAGTTGCGTTATCACATGCGAATCCATACAGgcgAGAAACCGTATGACTGTTCGTTTTGCGAAAAAGCGTTCAAGACAAAAAGCGCGATGATGGTTCATAAAAGAGTGCATACGGGAGAAAGAAGATACGAGTGTACGTATTGTCAAAAACGATTCACGGCAAGTCGATGTCTCAAGGATCATATCTTAATTCATACGGGGGAAAGACCGCACGTTTGTAGCCTTTGTGGACGGGCATTTACGCAGAGGACAGCTCTGAAGACTCACATGAAAATTCATTGA
- Protein Sequence
- MDEERRPDFSKICRTCLLQFKNMSSIFAQNISEMIIFCTNIKINKGDDLPKQICSKCIKEVKTSYHFKLKSEKSEELLHKYIQDDEKQLKNTSLVSVIKTENYQSEATADNDCFGSTIKPEITSKTQEEFDDGDSFKNSSRETTPDRQYEEAVTEPNTSGKLKKEIKRGESSSWKCEICGKELYNKHSVQRHMITHPEYRTDPVQCSVCKKQFFDKQYLTKHMLRHKGEKRYSCEFCERGFYELTPLANHVKKSHDVKPVQCGVCQKELTLQLQLDLHMRTHRDEYICNVCGKQATSLKALCSHRRMHNTNPFPCTQCDRRFKYKYSLHVHIKSSHMGIKKKKDVCNLCGFEVLNLNNHMLRRHATEKPHKCDRCDQAFAKKWILKQHQKMHTDEPRQQKELCTICGKKLMNYTKLRYHMRIHTGEKPYDCSFCEKAFKTKSAMMVHKRVHTGERRYECTYCQKRFTASRCLKDHILIHTGERPHVCSLCGRAFTQRTALKTHMKIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -