Basic Information

Insect: Xanthostigma xanthostigma
Gene Symbol: -
Assembly: GCA_963575645.1
Location: OY754473.1:1921913-1930778[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 4.8e-07 9.9e-06 26.2 1.7 1 23 358 380 358 380 0.98

2 8 0.00012 0.0024 18.7 4.7 1 23 386 408 386 408 0.99

3 8 2.2e-06 4.6e-05 24.1 2.0 1 23 414 436 414 436 0.98

4 8 0.00013 0.0026 18.6 5.1 1 23 442 464 442 464 0.97

5 8 1.6e-05 0.00032 21.5 6.6 1 23 470 492 470 492 0.98

6 8 0.00025 0.005 17.7 2.0 1 23 498 520 498 520 0.97

7 8 8.8e-05 0.0018 19.1 2.0 1 23 526 548 526 548 0.98

8 8 0.0005 0.01 16.8 1.9 1 20 554 573 554 575 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	4.8e-07	9.9e-06	26.2	1.7	1	23	358	380	358	380	0.98
2	8	0.00012	0.0024	18.7	4.7	1	23	386	408	386	408	0.99
3	8	2.2e-06	4.6e-05	24.1	2.0	1	23	414	436	414	436	0.98
4	8	0.00013	0.0026	18.6	5.1	1	23	442	464	442	464	0.97
5	8	1.6e-05	0.00032	21.5	6.6	1	23	470	492	470	492	0.98
6	8	0.00025	0.005	17.7	2.0	1	23	498	520	498	520	0.97
7	8	8.8e-05	0.0018	19.1	2.0	1	23	526	548	526	548	0.98
8	8	0.0005	0.01	16.8	1.9	1	20	554	573	554	575	0.95

Sequence Information

Coding Sequence: atgtctttaaaatccaaaataaaagaCGAGGACGATAATTCACTGATTTCACCAGACTGTGCTGAAGACATCTTAGAACCTTTATCAGTGGATGGTAAGGAATTGGAGGAGGACATGAATATCAATTGGAAAGTAGAAGAACCTGCAAATTTTAACTCGGAATACAAAACTAttgaagaaatgtttttaaaatccgaaataAAAGACGAGGACGATAATTCACTGATTTCACCAGACTGTGCTGAAGACATCTTAGAACCTTTATCTATGGATGGTGAGAAATTGGAGGAAGACATGAATATCAATTGGAAAGTGGAAGAACGTCCAAATTTGTACTCGGAATGCAAAGGTACTGaggaaatgtatttaaaatccgaaatcaaagacgaaccgaTGGACAACAGCTCATTAAATCTGACGGAATTTACTGATGACACAGTAAATGATTTTTCTAATAGTGTTAGCGAAATCAGGTGCAAAGACACAAAGGGAGGTACTTTAGAAATACGTGAGGTGATTGACTTGAAAGTCAACTGGACAGAGAAAGAATACGAAAGTTATAATTCATCAAGCGAAATTTACAtagaaatgtctttaaaatccaaaataaaagaCGAGGACGATAATTCACTGATTTCACCAGAGTGTGCTGAAGACATCTTAGAACCTTTATCAGTGGATGGTGAGGAATTGGAGGAGGAAATGAATATCAATTGGAAAATGGAAGAACCTACAAATTTTAACTCGGAATACAAAACTATTGaggaaatgtctttaaaatccgaaatcaaagacgaaccgaTGGACAACAGCTCATTAAATCTGACGGAATTTACTGATGACACAGTAAATGATTTTTCTAATAGTGTTAGCGAAATCAGTTGCAAAGACACAAAGGTCGGTTTTGGTCACATATCGGGAAATATCGCATATCCTCATTTATCTGTCCTGGAagagaatttttataaatttgaagaaaaaattgaaaatacctcGATAGATCGGGAGAAACACAAGAAACCCAGTACAGTGAAGATAACTCACAAACTGCAACATACTGGTAaaaagccatatcagtgtgacatttgtgagAAGTGTTTCGCTAGAAAGAGCAATTTAAATGCTCACAAACTgatacacactggtgagaaaccatatcagtgtgacatttgtaaaaagtgtttctctTGGCCAAGCCATTTAAATAGTcataaacgtatacatactgaagagaaaccatatcaatgtgacatttgtaaaaagcgtTTCACTCAGTCTAGcagtttaaatactcacaaactgatacatTCTGATGAAAAACCATATCACTGTGaaatttgtaagaagtgtttcactcagtctggcagtttaaatactcacaaactgatacatactggtgaaaaaccatatcaatgtgacatttgtaaaaagtgtttcactcactCAAGTACTTTAAATAAGCACAAACTGGTACATACTGATgaaaaaccgtatcaatgtgaagTTTGTAAAGAGTCTTTCACTCAGTCAAGGGAATTTAATACTCACAAACTGcagcatactggtgagaaaccgtatcaatgtgaagTTTGTAAAGAGTCTTTCACTCGGACAAGGGATTtgaatactcacaaactgaAACATACTGGTgtgaaaccatatcaatgtgatatttgtaagaagtgttttactaggtcagacattttaaatagacacaaactgGACGTTGAGGGATCAATCAGCAATATTGGCGACAGTAAATTGGTGGAAGACACGAATATCAATTGGAAAGTGGAAGAAAGTACAAATTTTCCCTCGGAATGCAAAAGTATTgaggaaatgtttttaaaatccgaaatcaaagaaGAACCGATGGACGACAGCTCATTAATTCTGACGGAATATACTGATGAGACAGTAAATGATTTTTCTAATGGCGTTAGCGAAATCAGCTGCGAGGACACAAAGGTCGTTTTTGGTCACATATCGGCAAATCCCGCATAA
Protein Sequence: MSLKSKIKDEDDNSLISPDCAEDILEPLSVDGKELEEDMNINWKVEEPANFNSEYKTIEEMFLKSEIKDEDDNSLISPDCAEDILEPLSMDGEKLEEDMNINWKVEERPNLYSECKGTEEMYLKSEIKDEPMDNSSLNLTEFTDDTVNDFSNSVSEIRCKDTKGGTLEIREVIDLKVNWTEKEYESYNSSSEIYIEMSLKSKIKDEDDNSLISPECAEDILEPLSVDGEELEEEMNINWKMEEPTNFNSEYKTIEEMSLKSEIKDEPMDNSSLNLTEFTDDTVNDFSNSVSEISCKDTKVGFGHISGNIAYPHLSVLEENFYKFEEKIENTSIDREKHKKPSTVKITHKLQHTGKKPYQCDICEKCFARKSNLNAHKLIHTGEKPYQCDICKKCFSWPSHLNSHKRIHTEEKPYQCDICKKRFTQSSSLNTHKLIHSDEKPYHCEICKKCFTQSGSLNTHKLIHTGEKPYQCDICKKCFTHSSTLNKHKLVHTDEKPYQCEVCKESFTQSREFNTHKLQHTGEKPYQCEVCKESFTRTRDLNTHKLKHTGVKPYQCDICKKCFTRSDILNRHKLDVEGSISNIGDSKLVEDTNINWKVEESTNFPSECKSIEEMFLKSEIKEEPMDDSSLILTEYTDETVNDFSNGVSEISCEDTKVVFGHISANPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -