Xxan004105.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- rswl
- Assembly
- GCA_963575645.1
- Location
- OY754465.1:36156628-36172099[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0011 0.022 15.7 1.4 1 23 249 271 249 271 0.98 2 12 0.00081 0.017 16.1 0.9 1 23 277 299 277 299 0.99 3 12 2e-05 0.00041 21.2 0.5 1 23 457 479 457 479 0.97 4 12 7.9 1.6e+02 3.6 0.0 2 21 488 507 487 508 0.93 5 12 0.068 1.4 10.0 1.1 3 20 584 601 582 604 0.88 6 12 0.14 3 9.0 0.1 1 23 609 632 609 632 0.93 7 12 4.1e-05 0.00084 20.2 0.4 1 23 638 660 638 660 0.98 8 12 0.0016 0.033 15.2 0.8 1 23 668 690 668 690 0.98 9 12 0.0025 0.051 14.6 0.3 3 23 698 718 696 718 0.97 10 12 0.0035 0.073 14.1 0.1 1 23 724 747 724 747 0.94 11 12 0.0016 0.032 15.2 0.1 1 23 759 781 759 781 0.97 12 12 0.023 0.48 11.5 0.1 1 19 862 880 862 882 0.96
Sequence Information
- Coding Sequence
- ATGACAGAATTATTAAGTGAACAAGCTTCATTAACGCAAATGATGGACAATGTAATTGTCGAACATATACATGAAGTACATATTGTTAAtgtgaataataaatttaataacgaGGATTTTGGAAGCACTTTAAATGAAGAGGAAATGTCTACGGAAACTGTTCTACTTCCCGAACCTGGAATTGATGAATACCAGGTAGCTTTACAAAGTTTACAGGAGCAATATGGACAAGATGTAAATATCGTTGAGgctcaacagttttattatgaGTCCGGTCAGTTAAACGGGAAATCATTTATTCCAACCAATTCCAAAGAATTGTTCAATGTAGACTATGATAAAATTACCAACGAATTGGGAAGTATACATAGCAGTTATAATACTCAAATACAAATAACTGATTCGATTGACAACGATACGCAGTTGCTCGATGAAGTTATTTGTAATGAGAATTTGAATGTCGTCGAGGAAGAAGTTTATGCCGATGTCAAGAGTGCATACGTAAGAAGTGACAACGGGAATAATATACAATGCAAGTTGGAATCGACAAGTGATGACGGAGATATTGATGGTTTTGAGGAATTCCAGAAAAAcgcgttattaataaaaaatgaattgcaATGTCAGACGACTCCTGATGAGAGtaTGGCTGCGGAAGCATTACGCCAACTCGGGGGAATGTTTGGGAATAGCGAAAAACAGGAGAATCGAAATAACAATACTCAAATAATTGCAGAAGAAAAATATTCTTGCTCAACGTGTAGCGCCATATTCAGAAAGAAGACAGACCTACAAAATCACCTAAACAGCCATCAGACGCAGCGGCCGTATCGTTGTCAAACTTGTAACGCTAATTTCCTACGACCCTCTAGTTTAACAAATCACatgaaaatacataattatcaaCCGGGAAGAGCGCTTGTAGCCGccgcaaataaatttttaaataatcaaatacCTGATTTTCCCTCGTCGATAAATTCACAgcaatggcaaccaaatcaaaaGTTAGACTCGAATGTCAGTGATCAAAGCTTATTCAATTCGACAGAACCAATTGCGAGCTGGAATTTTGATTTTTCCGGAAGTGATGATATTTCACAATCGGAAAACTTACCTATAGCTCAAGAAATTACGGCCAGCTCGACGTTTCAGGAGGAAACTGATTTTGATTGTTATAATCCAAATGTGGACTCTCAAGCGATTATGAGtagtcaaaataatcaatttaattatcAAACTGCTGTTAAGGTTGAGGAATTGCCGTTCATCGGAGATTTGAAAAGCAATCCAACAATTGTTGAGTCTTTTGCTGCAACAAATTTACAAGAAATACAGACAAGCGTTTGTATAGATGAAAAAAGAACGTACATATGCACGAAATGCGGAAAGGGTTTTTCTCGCGCTAAAGCACTAGCGAACCATCAAAATTTTCATAACGAAATATATAGTAGTCAACTGGAATGTCAGAATTGTGACGATGTATTTATTGATATTGAATCGGTGACTGCGCATAAACGGGTGTGTGCTGGTAAAGTCAACGATGATAACATAACCTCACAAAATATACCAGCGCCGCATACGCAGAGATTGCCATCTTTGCTGAACAGCCATGTAAAATCAATAACAGACCCAGATTTCACTTTAAATTTAGAACAGAACAGTAATACGAATACTGCTCAGGTTGATAAACCACAGGCGGCTGTGAATCAAAATACTAAACCTTCGGTGAAGGTCGGCAAACACGCATGCATAGAATGTGGAAAAAGATTCGCCACCAAACAAAAGATGTTTCGACATATGTGGATCCATCGTAAGAAGACGTTTACTTGTGAAATTTGCGCAATGACTTTTACATTGCAGCAAGAGCTCGATGAACATCGTTTGGCGCAACATCCTGGAGATACACCGTATGTTTGTCAGGAATGCGGAAAGTGTTTTGCGAGTCGCCAGGGTTTATGGGAACACGGCAGGGTGCATGGAAGTGGAACAGCTGGATTGTTTCGTTGCAAAGTTTGCGAGAAAAATTTCGCCAGTCGGCAGGGATATTTGATTCATACGAGAGTTCATACAGGGGAGAGACCGTACGGATGTCGATATTGCTGGAAGGCGTTCCGAGATGGCGGAACGTTACGCAAGCACGAGAGAATACATACGGGCGAGCGACCTCACGCGTGTCCTTTATGTCCTCGTGCCTTCAATCAAAAAGTAGTTCTGCGCGAACATGTTAGATGGGTTCATGCAGCGAACACTCGTCTTAACGATATCGATATGTATCCATGTTCGGTGTGCGGTCAGAATGTTAGCGACAGGGAAGAACTCTGCGCTCACATAGTGAAGCACAGCGATCAAATTGCAGCTATTGCAAAAGAAAATGCTACGAAACAAGGTAATGCCGTGGCGACGGTTGAGAACGATGTACAGTTACCAAAAGTGACAGGTATTAAGAGACAGAAGAAGAAATCTAAAGTAAATTTGGTCGTTAGCGTTATGAAGAACAACATTAAAGAAACCGCTGTGCAATTTATACAGTCGACGAATATTGAACAAATGAATAACGCAGGTGATTTTGTCAGTGAAGAATTCACCTGTGATATGTGCGAAAATGTATTCACATCACGTGACGATTTATTGACGCATGAAGGCCAATCCGTTCGGAGGTGCTTCTCACGCCAAAGGAATTGTATTGGAGTATTGGAGAAAGTTGATGTAGAAGCCAAACAACCGAACTCGGCTATCCGAAAATGCGTACGAGTACAACTTATTAAAAACGGTAAAAAAAATACGGCGTTCGTACCACGTGACCGCTGTTTAAATTGCATTGAAAAAAAGGCCGAAGTCCTAGTCGCTGGATTCGGTCATAAAGATCACGCTGTCGGTGATATTCCCGGAGTTAGATTTAAGGGAAAAACAAATATCACAGAGACGCGTTTGTTCTATTCTACACAAGATAAAGCTATTACCACGCACCAGTCTGATCTCGAAGAACAAAATAATGAAGACTCAGCTAAAGAATTGTCACCTGaagttATACAAGAAATAACCAAAGGAGATCCTACACTTGAAAAAAAGCTACGAATCTTAATGCTTGAAGCAGAAGTGTTGAGACAAGAAGGTAAAAATGTCTGTTCAAATAAATTCATGAAGAAAAAACACTGGATCGAACTATTGGGTATAGATTCTCGATCGGCtcgacaaaaatatttaaattttttgtttttaatagaatGTAAACAAGGCAATCGATTGATTAAAAAGCAAAAAAGACGTTTAGAATTGGAGACAACAGAATATCCGCCATCAGATGGTCATATTGATTACCGTTTaggtaaaaatacaatattttttcgaatataCGAAACGACCATCAATCAATTATATAATTCTAAGCTGATTCAAGCCATTATGTTCAGCCAAAAATTAGTTATCGATTGTGGTTACGATGAGCACATGACCAGAAGAGAAAAACTGAACACTGCCAAACAATTGATGTTGTTGTTTGCTAGCAATCGTATTCATGATGAGCCATTCGATCTTCACTATTGCAACGCAAATCTTGAAGGAGACGTCATGCAAAGTCTACATCGTTACATACCGACAATGTATGAAGATTGGTTTCCGTTAAACATTCATACCGAGAGCTATCTGGATTTGTTTCCTAAACAGAATTTAGTATACTTAACTCCGCATTGTCGTAACGATCTTGTGGAATACGATCATGATGCCGTATATATTATCGGAGCGATGGTAGATAAGgtacaTACCGAACCTGTATCTCTAGCCAAAGCAAAAtctgacaaaataaaatatgcacGTTTACCATTGGATCAATATCTTAACTGGGGTTGTGGATCAGGAAAATCTCTAGCCATCAATCAAGTTGCAGATATCATGTTAGACATAAGAAAAACAGGCGATTGGAGTTTCGCGCTGCGCCATGTTCCAAGAAGAAAAATTATCGATTCAGTTACATTTGAAAGTGACTTTgacaaaaatagaaaagaaaatGTCAAACATTTCAGAGAAAAATTATCAAAGCATAAATTTAAAACACCTGATCAAAAGAAAGGTATAAATTATACAAACTTGTTTGAtaggtaa
- Protein Sequence
- MTELLSEQASLTQMMDNVIVEHIHEVHIVNVNNKFNNEDFGSTLNEEEMSTETVLLPEPGIDEYQVALQSLQEQYGQDVNIVEAQQFYYESGQLNGKSFIPTNSKELFNVDYDKITNELGSIHSSYNTQIQITDSIDNDTQLLDEVICNENLNVVEEEVYADVKSAYVRSDNGNNIQCKLESTSDDGDIDGFEEFQKNALLIKNELQCQTTPDESMAAEALRQLGGMFGNSEKQENRNNNTQIIAEEKYSCSTCSAIFRKKTDLQNHLNSHQTQRPYRCQTCNANFLRPSSLTNHMKIHNYQPGRALVAAANKFLNNQIPDFPSSINSQQWQPNQKLDSNVSDQSLFNSTEPIASWNFDFSGSDDISQSENLPIAQEITASSTFQEETDFDCYNPNVDSQAIMSSQNNQFNYQTAVKVEELPFIGDLKSNPTIVESFAATNLQEIQTSVCIDEKRTYICTKCGKGFSRAKALANHQNFHNEIYSSQLECQNCDDVFIDIESVTAHKRVCAGKVNDDNITSQNIPAPHTQRLPSLLNSHVKSITDPDFTLNLEQNSNTNTAQVDKPQAAVNQNTKPSVKVGKHACIECGKRFATKQKMFRHMWIHRKKTFTCEICAMTFTLQQELDEHRLAQHPGDTPYVCQECGKCFASRQGLWEHGRVHGSGTAGLFRCKVCEKNFASRQGYLIHTRVHTGERPYGCRYCWKAFRDGGTLRKHERIHTGERPHACPLCPRAFNQKVVLREHVRWVHAANTRLNDIDMYPCSVCGQNVSDREELCAHIVKHSDQIAAIAKENATKQGNAVATVENDVQLPKVTGIKRQKKKSKVNLVVSVMKNNIKETAVQFIQSTNIEQMNNAGDFVSEEFTCDMCENVFTSRDDLLTHEGQSVRRCFSRQRNCIGVLEKVDVEAKQPNSAIRKCVRVQLIKNGKKNTAFVPRDRCLNCIEKKAEVLVAGFGHKDHAVGDIPGVRFKGKTNITETRLFYSTQDKAITTHQSDLEEQNNEDSAKELSPEVIQEITKGDPTLEKKLRILMLEAEVLRQEGKNVCSNKFMKKKHWIELLGIDSRSARQKYLNFLFLIECKQGNRLIKKQKRRLELETTEYPPSDGHIDYRLGKNTIFFRIYETTINQLYNSKLIQAIMFSQKLVIDCGYDEHMTRREKLNTAKQLMLLFASNRIHDEPFDLHYCNANLEGDVMQSLHRYIPTMYEDWFPLNIHTESYLDLFPKQNLVYLTPHCRNDLVEYDHDAVYIIGAMVDKVHTEPVSLAKAKSDKIKYARLPLDQYLNWGCGSGKSLAINQVADIMLDIRKTGDWSFALRHVPRRKIIDSVTFESDFDKNRKENVKHFREKLSKHKFKTPDQKKGINYTNLFDR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -