Xxan010018.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754468.1:35216712-35218409[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.1e-06 0.0001 23.0 1.5 1 23 168 190 168 190 0.98 2 13 0.0031 0.064 14.3 0.2 1 23 196 218 196 218 0.97 3 13 0.024 0.49 11.5 0.5 2 23 224 245 223 245 0.96 4 13 0.002 0.041 14.9 3.8 1 23 251 273 251 273 0.95 5 13 0.00087 0.018 16.0 7.3 1 23 279 301 279 301 0.98 6 13 0.00034 0.007 17.3 2.3 1 23 309 331 309 331 0.98 7 13 0.0022 0.045 14.7 2.9 1 23 337 360 337 360 0.96 8 13 0.086 1.8 9.7 0.9 3 21 370 385 369 388 0.72 9 13 0.00016 0.0034 18.3 0.2 1 23 394 417 394 417 0.98 10 13 0.12 2.5 9.3 2.1 1 23 425 447 425 447 0.95 11 13 0.021 0.43 11.7 2.4 1 23 453 475 453 475 0.96 12 13 3.7e-05 0.00075 20.3 0.4 3 23 483 503 481 503 0.97 13 13 1.6e-05 0.00032 21.5 0.8 1 23 509 532 509 532 0.96
Sequence Information
- Coding Sequence
- ATGGAGACAACAATCAAGTTTTCTGATTTTCCAAGTATTTGTCGAACATGTTTGCTTCAAAAAGACGGAATGCAGCCTCTGTACAAATGTCAAGCACAAGATATGCTGGCagcttttatgacaataaaggccgAAATGGAAGACAGTTTACCAGTTTTAATATGTCCGGAATGTTTAAATCAAGTTGCCAATTGTTACAACTTTAAACAGCAATGTGAACTCAGTAATCAAATATTACAacaaatattagaaaataactcgaattttttttcGGACGTAAAACAGCAATCCAACATAACAGAAAGTCATGAGACCGATAAGTTTAACGACGTTTTATCTGCATTCCCAATCAAAACTGAAAACTGCCAAGAAGCTTACACGTCAGAAGCAAATAATTCGGCGAATAAAAAAGAGACTTACGAGTGCAAAATTAGTAATAAAGATTTAAAGACAATCGATAGACCGAAATGTCATAATCAGAGACACAACAAAAAGCGTAAATTTGTTTGTTCTATTTGTCAGAAAGGTTTTTTCGAAAAGAGTTCTTTAAATAAACACATCCGTCGTCACGAAAGCAGTGGACGTTTTAGCTGTGAAGTATGtgataaaaaattttacgaaCTTAGTGCCCAAGCCATACACATGGCAAAACACGACATCGAACCGATGTCATGTCCAGTTtgcaacaaacaatttttagttAAATTACAGCTTAAACTGCATATGGAAAAGCATCAAGAACAGCCTATTTATGCTTGCTTACAATGCGGAAAGAATTGCACTACACAGCATACGTTGGAAAGGCACAAATTAGCTCACGAAACGTCTCGGACATACAGCTGCGATTCTTGcggaaaaaaatgcaaatctcAGCACACTTTAAACCGCCACAAAATGACGCATAATTCAGATTCAGTTCGGGTGTATAAATGCGAAATGTGTGGAAGAAAATGCGCAACACAGTATACTTTAGACCGACACAAAATTATCCACGCGTCGACTAGTACTTTTGAATGCGAGTTGTGTAACAACAAATACAAGCATTCGTATACATTGCGAAATCATATACAACAAGTTCATAAAGGCATCAAACCTAAGAGAGGCATATGCAATATTTGTGGAAGATCGTTCACTTCGTTAAAGTATCACATGTACTCAAAGCACAGCGAGCAACGACCGTTTAAGTGTGAAGAATGTGAAGCTGGCTATGTGACTAAAAATGAATTGAACAGACATGTGCGTGTCAAGCACAAAGGCGAAATGTTAGACAAATTCTTGTGTAACATTTGCGGTAAAGGATACAGATGTCAAGCTGTTTTAGATATTCACATGCGACACCATAATGAGGACCGTCCATTTAAATGCGAAACTTGCGGCAAAGCGTTCTTTATAGGAAGTTCACTGAAAATACACTGCAGATCTCACACGGGCGAGCGTCCCTATGGATGCACCACTTGCGGAAAGGGGTTCGCCACAAACACTTTACTGAAAGTACATACACGCATACACACTGGTGAACGTCCGTATACATGCAATATTTGTGGCAGGTCGTTTACGCAAAAAACGCCCTTAATAACACATAAAGAACGATTGCATCAAGAGGCCAACGTCTTTGTGACACTTAATGGTTCTTAA
- Protein Sequence
- METTIKFSDFPSICRTCLLQKDGMQPLYKCQAQDMLAAFMTIKAEMEDSLPVLICPECLNQVANCYNFKQQCELSNQILQQILENNSNFFSDVKQQSNITESHETDKFNDVLSAFPIKTENCQEAYTSEANNSANKKETYECKISNKDLKTIDRPKCHNQRHNKKRKFVCSICQKGFFEKSSLNKHIRRHESSGRFSCEVCDKKFYELSAQAIHMAKHDIEPMSCPVCNKQFLVKLQLKLHMEKHQEQPIYACLQCGKNCTTQHTLERHKLAHETSRTYSCDSCGKKCKSQHTLNRHKMTHNSDSVRVYKCEMCGRKCATQYTLDRHKIIHASTSTFECELCNNKYKHSYTLRNHIQQVHKGIKPKRGICNICGRSFTSLKYHMYSKHSEQRPFKCEECEAGYVTKNELNRHVRVKHKGEMLDKFLCNICGKGYRCQAVLDIHMRHHNEDRPFKCETCGKAFFIGSSLKIHCRSHTGERPYGCTTCGKGFATNTLLKVHTRIHTGERPYTCNICGRSFTQKTPLITHKERLHQEANVFVTLNGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -