Xxan008791.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754468.1:1348000-1363081[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.087 1.8 9.7 2.9 2 23 126 149 125 149 0.92 2 11 1.5e-05 0.0003 21.6 1.9 1 23 155 176 155 176 0.97 3 11 0.00023 0.0048 17.8 4.5 1 23 182 204 182 204 0.98 4 11 0.0004 0.0082 17.1 3.6 1 23 210 232 210 232 0.98 5 11 1.2e-05 0.00024 21.9 2.1 1 23 238 260 238 260 0.98 6 11 0.0062 0.13 13.3 3.2 1 23 280 302 280 302 0.97 7 11 0.00017 0.0034 18.3 0.5 1 23 307 329 307 329 0.96 8 11 7e-05 0.0014 19.4 0.8 1 23 335 357 335 357 0.96 9 11 1.7e-05 0.00035 21.4 3.7 1 23 363 385 363 385 0.98 10 11 1.4e-06 2.9e-05 24.8 0.7 1 23 391 413 391 413 0.98 11 11 0.45 9.3 7.5 0.3 1 14 419 432 419 434 0.88
Sequence Information
- Coding Sequence
- ATGTGCATGCCTTGTATTTCCGAAATGCTACAAGCGTATTCGTTCAAACAAAAATGCGAAGAAGCCGACAAAAAATTACGGGGCTGCAATTACGGCAACGGACGCGAAGACAAGGCACACGAttataatatagatttaaataaaatcaagtACGAAGGCGATCCGGTCGAAATTAAAGTAGAAACAGTCATCACGGACGAATTAGCGAACGAAAGTGAGAACGACGACTCCGGCTCAAGAAACGGTGACGCCGCTAGCAACGCGAGCTGGGAAAGCGTTGAgaaattaatgaaacaattgAAAGTCCGAAAACGGCGAAAAATCGTTAACAGATCGAACAAGAGAAAAAGGAGTAAAAACTCGGAAAATAGTTTAGAATGCAAACAGTGTTGCATCGCGTTCAATACGAAATCAGAACTTAGCGAGCACATGAAGACAAAAAAGCATCCCCGTAAACGCAACCATTCCTGCGAAATATGCGGCAAACCGTTCACCTTCTCGCAACTGAAGGTACACATGAGAACTCACACGGGGGAAAGACCGTATTCGTGTCACGTTTGTGGGTCTCGATTTACGATGAACCGAAACTTGCACCGACATATGATGATTCACACAGGAGAGCGACCCCACCAGTGTCAGTATTGTAATAAAGGTTTTATTCAGTATCATTCGCTAGTAGATCATTTAAGAGTCCATACCGGAGAAACACCTTTCGTTTGCAGTTATTGCGGAACCACATTCAAGCAATCGGGAAGGTTCACAATACATATGAGAAAACACATAGCAGAAAATGAGGGCGTCACCAACAAAGACGAAAATATTGGAAAAGAAAAACGttttacgtGCGAGATGTGCGATCACTCGTTTTATTTCGAAAGTGAATTAAAATCTCATTCGTTACGACACGGCCCTAAGAAGTTTTTGTGCAGCGATTGCGGTAAAGGTTTCGTAACGAAACTGGGACTCCAGACTCACAGCAGGACCCACAGCGGGGAGCGGCCGTACTCGTGCGGTATTTGCGGCAAGGCTTTCTCGCATTACGGATCGCTCAAATCTCATAACCTCATTCACACAGGAGAAAGACCGTTCGTTTGCTCCGTATGCAATAAAACGTTCACGCAACGAAACCATCTCAAGTATCACGTTAGAATTCACAGCGGAGAGAAACCGTATTCGTGCTCCGTGTGCAAGAAAAGCTTCTCTCTCAACGGAAATCTCACGGTTCACATGAGGATTCATACGGGAGAGACGCCATTTTTGTGTCCGGTTTGCGGCAAAGGATTTTATGATTCGAGTAtGAAAAGCGAATCATACTATCGCCGCAAAGAGCTGTTCAGGACACAGGAAACCCCTACACAATCAGAAGTTATATGTCAACACAAAAAAGCTTTGAGCGAAGTATTATTCGATATTTTCCCGGCTACAATTCAACAGGATTTGGGCGTTGCTCCGCCACTGCAAGGACCCGGATGTGATCTTTGGGTTTCGCCAAGCGATTTGCTCATACCGATAGTTCGACTGAAGCCTCCGCTGACATCAAAACATGTACAAGCTTTGACCCACGAGGGAATTTTAGGCATTGGACGTGAGATCGAACAGAAATTAATCGAAGCGAAAAACAGAGAAACGGAAATAGCACTTCGGCAACTGCAAGCAAAACTAGATCGACTATACGAACAAGAAATACAAATTGCTAAAATAATGGAAAGGCAAATATGTGAAATGGAATTCGAGGAGCACGTTGCACTAATGAAAGTCGAATTCCAAAACGAGATGACGATTGCGCTGAAACAACTCCAAGAACATATGCAAATACAAGAAGACATCAGAGTTGAATATGAACGGCTGTACGTACAAAGGATAATGGAAATCAGATTGGAAGCAGCGTTGAAAAATCAAGCCACtcaattaaaaacacaatttgcCAAGATTCTGAAAGATCAATGCGAAGAGTTCCAAAAATATCTTAAGAAACAGTTAAAtgcGCAGTACGAAAAATATATGGTAGAATTAGAAAAAGAGAGAAATGATAAATTATATCGTCTTAAATTATTGAGACATCATCTCGAATGTAAAAATATCGCAAACTTAATGTACGTACTATGCGCCGAACGGGTCAGATGTTCGGAGGAAGTGTTCCAAATCCATCAAGATTATAAACTATTGATATTAGATCTAGAAGAAGATGTTTCGAAGAAAAAGAGTGAAATCGAAGAACTAATTGCTACCAACTTATATAAAGATAGAAAATTAGTAGCTTGGGAAGAGCGATGccaagaaataataaaacaattccagAAGTTTATCAATTTCTCTCTGAAAGCTGTACCGTCGCAAGCTGAATTTTTATTGAACGTTCGAAAACTTATGGCACTAAGTATTTCAGAAATACCAGAAGTTCGTTTCTGTCCCGATTTTTGCACGGCCAGTGTATGCAGTGAAAATTCGTGTGATTATGAATGCACTCCTAAAATTCCGTCCGATCTGAACGAAAACGTCCACGGCGACAACGTAATGAAGTATGGAATAACGACACCCGATACACCGTCGGTACAGGCCACCGACTCTTATAAAACACTAGATACGGAATACGATTTGCGTTGcgttatgtttaataaacaaacTTACGTACGAGAAGATGTTCGTAACCAGCAAGCGCtcttgatgaaaaatgttatagAGAACgatatttgGAAAACTGGTGAAAATGACGACGTGAAATCAGAGATTCTCAGCCCGGCGAATTTAGAACAAGTAAATATTTTACGATCGAGTGTGCGTTTCAGTTACGATGAATATAACACCGCACAATTTCCGTTGAAGAGTTTATCACCCACGTCACTGATTTCTAAAAATAGTACGAATAGCGCGTCGGGTGGTATACTGAAAAAACCATCGATTATGCCAGATAGTGCTTCAATATCAACGGGAACAAATTCCGAAAAAATGAAGATCGAATCAAAATTGCTCGGCCCTCGTAACTCGTTGGAAATAGTGAATCCAAGAACTTTGGAAATATTAGGTCAGAAAACAAGACACAGAGAGACGCTCGCAAAAGACAGTAACAGTTCATTAAAGAAACGAAGACTATCTCGGTTACTTTCCGTACGTGACTCCGTAACACTACACAAAGAACGATTGGTCAGTAAGGATGGTATCGAGGAATTTTATCCTCAGACAAAAGAACAGAATGTAAAATCAGACACAGATCTCGGCCGAGAACTAACGATCGGTgtcaacaataacaaaaaactAAGTTTAAGCAGAGATTCTCTGGAATTTCACAAAATGCGGCTATCAAAAGACGTAATGCAATCGGTACAGTTTGTTAACAAAAGTTCAAAACGCGAATCAAAACTGGTCACGGCAAGGGATTCGTTGATCATGCACAGACAATCGATAAAAGGTAGCGTACTTCCTATCGATAATCGACAGGCCGGTGAAAATTCATTACAATGCCTGTTGAAGTCACGATCGGGCGAGTCGACTTTATCGGAAAACAAACAGAAGCGAACGTCGAAAGAAAACATTTCAATTGCTTCTCAGAAAAATTCTCACATATGCATCGTAGAAGATATAAAACTTAACAAGGATCTGTCAACTTCCAGTTCGATGACATTCTCTGCTGTCAGCTTTGATCAACTGTTAAAAATAACACACAAAACGGATCCACAAGCAACGCTATCGAATGACTCGATAGACaagaaaggaaaaaatgaaGTCGAAATATTGCCAACAGTCACAACCAGTAAGAAagcattttataatgattttaacACACAAAAGGGAGGTcaattaaggtag
- Protein Sequence
- MCMPCISEMLQAYSFKQKCEEADKKLRGCNYGNGREDKAHDYNIDLNKIKYEGDPVEIKVETVITDELANESENDDSGSRNGDAASNASWESVEKLMKQLKVRKRRKIVNRSNKRKRSKNSENSLECKQCCIAFNTKSELSEHMKTKKHPRKRNHSCEICGKPFTFSQLKVHMRTHTGERPYSCHVCGSRFTMNRNLHRHMMIHTGERPHQCQYCNKGFIQYHSLVDHLRVHTGETPFVCSYCGTTFKQSGRFTIHMRKHIAENEGVTNKDENIGKEKRFTCEMCDHSFYFESELKSHSLRHGPKKFLCSDCGKGFVTKLGLQTHSRTHSGERPYSCGICGKAFSHYGSLKSHNLIHTGERPFVCSVCNKTFTQRNHLKYHVRIHSGEKPYSCSVCKKSFSLNGNLTVHMRIHTGETPFLCPVCGKGFYDSSMKSESYYRRKELFRTQETPTQSEVICQHKKALSEVLFDIFPATIQQDLGVAPPLQGPGCDLWVSPSDLLIPIVRLKPPLTSKHVQALTHEGILGIGREIEQKLIEAKNRETEIALRQLQAKLDRLYEQEIQIAKIMERQICEMEFEEHVALMKVEFQNEMTIALKQLQEHMQIQEDIRVEYERLYVQRIMEIRLEAALKNQATQLKTQFAKILKDQCEEFQKYLKKQLNAQYEKYMVELEKERNDKLYRLKLLRHHLECKNIANLMYVLCAERVRCSEEVFQIHQDYKLLILDLEEDVSKKKSEIEELIATNLYKDRKLVAWEERCQEIIKQFQKFINFSLKAVPSQAEFLLNVRKLMALSISEIPEVRFCPDFCTASVCSENSCDYECTPKIPSDLNENVHGDNVMKYGITTPDTPSVQATDSYKTLDTEYDLRCVMFNKQTYVREDVRNQQALLMKNVIENDIWKTGENDDVKSEILSPANLEQVNILRSSVRFSYDEYNTAQFPLKSLSPTSLISKNSTNSASGGILKKPSIMPDSASISTGTNSEKMKIESKLLGPRNSLEIVNPRTLEILGQKTRHRETLAKDSNSSLKKRRLSRLLSVRDSVTLHKERLVSKDGIEEFYPQTKEQNVKSDTDLGRELTIGVNNNKKLSLSRDSLEFHKMRLSKDVMQSVQFVNKSSKRESKLVTARDSLIMHRQSIKGSVLPIDNRQAGENSLQCLLKSRSGESTLSENKQKRTSKENISIASQKNSHICIVEDIKLNKDLSTSSSMTFSAVSFDQLLKITHKTDPQATLSNDSIDKKGKNEVEILPTVTTSKKAFYNDFNTQKGGQLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -