Xxan010017.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- Sall3
- Assembly
- GCA_963575645.1
- Location
- OY754468.1:35212719-35214715[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00012 0.0024 18.7 1.9 2 23 115 136 114 136 0.96 2 12 4.5e-05 0.00091 20.1 5.7 1 23 144 166 144 166 0.98 3 12 0.00088 0.018 16.0 0.1 1 23 172 194 172 194 0.98 4 12 0.039 0.8 10.8 0.2 2 23 200 221 199 221 0.96 5 12 1.6e-05 0.00033 21.4 0.9 2 23 228 249 228 249 0.97 6 12 0.028 0.57 11.3 5.1 1 23 255 278 255 278 0.95 7 12 0.61 13 7.0 0.5 2 18 287 300 286 306 0.72 8 12 0.0083 0.17 12.9 0.7 1 23 312 335 312 335 0.97 9 12 7.4e-05 0.0015 19.4 1.3 3 23 345 365 344 365 0.99 10 12 1.8e-05 0.00036 21.3 0.1 1 23 371 393 371 393 0.99 11 12 0.0036 0.074 14.1 0.5 5 23 403 421 401 421 0.94 12 12 4.1e-05 0.00084 20.2 5.4 1 23 427 450 427 450 0.98
Sequence Information
- Coding Sequence
- ATGGACACCGATGATAGTTTGGACGACGCAGTAGTTGGGGTTGCTGAAGTCTGCGATGGTTTACCGACCCTTGTGTGCGCAGAATGTGTGACACAAATAGTAAATTGTTACAACTTTATACAACAATGCGAGAAGAACAATgccattttaaaacaaatacgaTTACAAGATGCTACCACTTCCGATGCATATCGTAACAATTCaaacagtaatttatttaaagacACCCAACTAGAATCGTCTGCACACAACGATTCGGAACAAATCAATAACGATAACGATTCCAATATCGTCGATTCACCAGAAGAAAACGATTTTATGAGCAAAAAAGACACCGACTGTACATGTAAAATATGCGGTAAAGTCCTGGTAACAATTCATACTCTAGCTCGACATATGCAGATACATAACAAAAATCGCAAATTTACGCATCGATGTTCCGTTTGTCAGAAAGGGTTCTACGAAAAGGGTCACCTTAATAAGCACATGCGTCGTCACGAAGGCGCTACTCGTTACAGCTGCGAAATATGTGGAAAAGAGTTTTATGAACTCAGCGCACAATCAGTGCACATGGCAAAGCACAACGTAAAACCGATGTCATGTACAATTTGCGACAAACAATTCTTAGTGAAACTGCAACTGGAGATTCACATTAAGGGCCACACAAAACAGCCGACTAACGTATGTTCGTACTGCGGAAAACGGTATAATACACCGAGCAGATTGGAGCGTCATAAATTAACGCACGAATCGATTCGAGCGTACGCTTGTAAATTTTGCGACGGTCGATTCAAACATTCGTTCACGTTAAACCATCACGTAAAACAAGTGCATCAaggtataaaacaaaagaaagtcgTCTGTAACATATGCGGAAAGTCGGTTACATATTTAAAGCATCACATATACGCAAAGCACAGTAATAGGCGACCGTATAACTGCGAAGAATGTGGAGCTGGCTTCGTATGCAATTCGAAACTCAATATACACGTTCGTTCGAAACATAAAGGTGAATTTTTACACAACGCGTTATGTAGTGTATGCGGAAAACAGTGCCAAACGTCTGGAAATTTGGAAATTCACATGAGATCACATACAAAGGAGCGTCCATTTAAATGCGATACGTGCGGTAAAGCGTTCATGGCAGCGGGCGCGTTAAAGACTCATATAAGATCGCATACGGGTGAGCGTCCGTATGGCTGTATTACTTGCGGGCAAGCGTTTTCAACGAGTACGTCTCTCAAAATACACAATAGAATTCATACGGGTGAGCGGCCCTACACTTGTAATGTATGTAATAAGACGTTTAGACAGAAGTGTACATTGGTGACGCATCAGAAGAAACTACATTAA
- Protein Sequence
- MDTDDSLDDAVVGVAEVCDGLPTLVCAECVTQIVNCYNFIQQCEKNNAILKQIRLQDATTSDAYRNNSNSNLFKDTQLESSAHNDSEQINNDNDSNIVDSPEENDFMSKKDTDCTCKICGKVLVTIHTLARHMQIHNKNRKFTHRCSVCQKGFYEKGHLNKHMRRHEGATRYSCEICGKEFYELSAQSVHMAKHNVKPMSCTICDKQFLVKLQLEIHIKGHTKQPTNVCSYCGKRYNTPSRLERHKLTHESIRAYACKFCDGRFKHSFTLNHHVKQVHQGIKQKKVVCNICGKSVTYLKHHIYAKHSNRRPYNCEECGAGFVCNSKLNIHVRSKHKGEFLHNALCSVCGKQCQTSGNLEIHMRSHTKERPFKCDTCGKAFMAAGALKTHIRSHTGERPYGCITCGQAFSTSTSLKIHNRIHTGERPYTCNVCNKTFRQKCTLVTHQKKLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01511333;
- 90% Identity
- iTF_01511333;
- 80% Identity
- -