Basic Information

Insect: Xanthostigma xanthostigma
Gene Symbol: -
Assembly: GCA_963575645.1
Location: OY754472.1:24798800-24802335[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00017 0.0035 18.2 0.5 3 23 190 210 188 210 0.97

2 11 0.12 2.5 9.3 0.4 1 23 216 239 216 239 0.90

3 11 0.022 0.46 11.6 0.8 2 23 245 266 244 266 0.97

4 11 8.7e-05 0.0018 19.1 1.0 2 23 272 293 272 293 0.96

5 11 0.00063 0.013 16.5 6.6 1 23 299 322 299 322 0.95

6 11 1.8 37 5.5 0.1 3 22 332 348 331 350 0.71

7 11 2.7e-06 5.6e-05 23.9 3.4 1 23 355 377 355 377 0.98

8 11 4.9e-05 0.001 19.9 2.8 3 23 388 408 387 408 0.99

9 11 4.8e-07 9.8e-06 26.3 0.7 1 23 414 436 414 436 0.98

10 11 6.3e-05 0.0013 19.6 0.7 1 23 442 464 442 464 0.98

11 11 3.6e-06 7.4e-05 23.5 1.6 1 23 470 492 470 492 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00017	0.0035	18.2	0.5	3	23	190	210	188	210	0.97
2	11	0.12	2.5	9.3	0.4	1	23	216	239	216	239	0.90
3	11	0.022	0.46	11.6	0.8	2	23	245	266	244	266	0.97
4	11	8.7e-05	0.0018	19.1	1.0	2	23	272	293	272	293	0.96
5	11	0.00063	0.013	16.5	6.6	1	23	299	322	299	322	0.95
6	11	1.8	37	5.5	0.1	3	22	332	348	331	350	0.71
7	11	2.7e-06	5.6e-05	23.9	3.4	1	23	355	377	355	377	0.98
8	11	4.9e-05	0.001	19.9	2.8	3	23	388	408	387	408	0.99
9	11	4.8e-07	9.8e-06	26.3	0.7	1	23	414	436	414	436	0.98
10	11	6.3e-05	0.0013	19.6	0.7	1	23	442	464	442	464	0.98
11	11	3.6e-06	7.4e-05	23.5	1.6	1	23	470	492	470	492	0.98

Sequence Information

Coding Sequence: atgTCAAAAACTATATCTAAAacggatttcaaaaaaatttgtcgaaCATGCTTATTGAAAGAAGAAAATATGACATCAATTTATTTAccggatattttaaaaatgctaagaatttgtacaaaattgaagTTAAAACAATTAGATGGTTTGCCGCATCAAATTTGCTCAAAATGCTTAAACAAAGTCAACATGTTTTATTCATTTAGATGCGAAACGGAAAAAACTGAGCATCAGCTAAGAAATCTACTTAACGGTCGGGAAGGAAAAAACAATTGGGAATCAAACGGTTTGTCTAGTGATTTTAACAGTATAATTAAAGACGAAATCAAATCTGAAGAACAAACAGATTTTCATAACTATGATATAAACTCTGTAAAAGTAGAATCGATACCGGAAATAACTGACAAATCCAACAACGATGCATCGGAACAAATCATCGATAGTGAACAAAGCGAAAATGAAAACGATGACACGTTTTCAGATAATAGTAAAGACGCTGAATACGATAAATCGGATAGATTATCAGAGAAAAGAACATCAGACGATAGCACTAAAAATAAACAGATTTGTCCGATATGTAAAAAGGAATTTCCTTTAAagaattatttaacaaaacatttGCTGCGACATAAAGgcgataaaaaatataaatgcgaATTTTGCAATAAAGGTTTTTATGAGCTAAATGCGATGGCGTTGCATGCTGAACGGAAACACAATACCGAACCCGTACAATGTTCAGTCTGTCaaaaacgatttaaaataaaactccaACTCGATATGCATTCGAGGATTCATGAGGAACTGATTCCTAGTTGTGAAACGTGCGGGAAAGTTTTCCGTACGATGACGCTACTAaagaaacataaaataattcacGCAAATAATGACTATTTTTTGTGTTCACACTGTGATAAGTGGTTCAAACATCAAAGCAGTTTGAGATTACACATGAGAAAATTTCATAATGgcgaagtaaaaaaaaaggaaatatgtAATTTGTGTGGCAAAATGTATGCCAACGTAAAAATACACATTCTTAGCGTACATTCCGATAGGCCGCACAAGTGTCCGCATTGTGATTTGTCGTTTGCTTTCTCGAGTTCTTTGAAAACGCACATTCGGATTCATTTGGGCCAGCCTAAAGTACGGAAGATATTGTGTAATGTCTGCGGAAAAAAATGCGAAACGAACACACAGCTGAGAATTCATATGCGAAGTCATacaggCGAGCGACCGTACGAGTGTTCCGATTGCGACAAAACGTTTAAAACTTCGACGCAGCTAGCCGTCCACAGACGAGCTCATTCCGGCGAGCGGCCATATTCATGTACGTTCTGCGATAAGTCGTTCTTTACGGCCAACGTGCTGAAGGCTCATGTCCGAATACACACAGGCGAAAATCCCTATGTTTGTAACGTCTGCGGCAGAGGTTTCaaacaaaaacatgttttgacAACCCATATGAAAATacatcagtga
Protein Sequence: MSKTISKTDFKKICRTCLLKEENMTSIYLPDILKMLRICTKLKLKQLDGLPHQICSKCLNKVNMFYSFRCETEKTEHQLRNLLNGREGKNNWESNGLSSDFNSIIKDEIKSEEQTDFHNYDINSVKVESIPEITDKSNNDASEQIIDSEQSENENDDTFSDNSKDAEYDKSDRLSEKRTSDDSTKNKQICPICKKEFPLKNYLTKHLLRHKGDKKYKCEFCNKGFYELNAMALHAERKHNTEPVQCSVCQKRFKIKLQLDMHSRIHEELIPSCETCGKVFRTMTLLKKHKIIHANNDYFLCSHCDKWFKHQSSLRLHMRKFHNGEVKKKEICNLCGKMYANVKIHILSVHSDRPHKCPHCDLSFAFSSSLKTHIRIHLGQPKVRKILCNVCGKKCETNTQLRIHMRSHTGERPYECSDCDKTFKTSTQLAVHRRAHSGERPYSCTFCDKSFFTANVLKAHVRIHTGENPYVCNVCGRGFKQKHVLTTHMKIHQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01511309;
90% Identity: iTF_01511309;
80% Identity: -