Basic Information

Insect: Xanthostigma xanthostigma
Gene Symbol: -
Assembly: GCA_963575645.1
Location: OY754474.1:16164432-16167063[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 6.6e-06 0.00014 22.7 1.4 1 23 170 192 170 192 0.99

2 12 2.3e-05 0.00048 21.0 0.8 3 23 202 222 201 222 0.99

3 12 9.7 2e+02 3.3 3.4 1 23 228 250 228 251 0.84

4 12 0.00032 0.0066 17.4 0.3 2 23 257 278 256 278 0.97

5 12 0.00095 0.019 15.9 3.8 1 23 283 305 283 305 0.96

6 12 0.0036 0.073 14.1 2.5 3 23 313 334 311 334 0.95

7 12 5.3 1.1e+02 4.1 0.4 3 16 343 353 342 361 0.72

8 12 1.3e-05 0.00026 21.8 1.3 1 23 367 389 367 389 0.99

9 12 0.00046 0.0094 16.9 0.1 3 23 400 420 399 420 0.99

10 12 3.2e-06 6.6e-05 23.6 0.7 1 23 426 448 426 448 0.98

11 12 0.12 2.5 9.2 7.3 1 23 454 476 454 476 0.96

12 12 3.1e-07 6.4e-06 26.8 0.8 1 23 482 504 482 504 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	6.6e-06	0.00014	22.7	1.4	1	23	170	192	170	192	0.99
2	12	2.3e-05	0.00048	21.0	0.8	3	23	202	222	201	222	0.99
3	12	9.7	2e+02	3.3	3.4	1	23	228	250	228	251	0.84
4	12	0.00032	0.0066	17.4	0.3	2	23	257	278	256	278	0.97
5	12	0.00095	0.019	15.9	3.8	1	23	283	305	283	305	0.96
6	12	0.0036	0.073	14.1	2.5	3	23	313	334	311	334	0.95
7	12	5.3	1.1e+02	4.1	0.4	3	16	343	353	342	361	0.72
8	12	1.3e-05	0.00026	21.8	1.3	1	23	367	389	367	389	0.99
9	12	0.00046	0.0094	16.9	0.1	3	23	400	420	399	420	0.99
10	12	3.2e-06	6.6e-05	23.6	0.7	1	23	426	448	426	448	0.98
11	12	0.12	2.5	9.2	7.3	1	23	454	476	454	476	0.96
12	12	3.1e-07	6.4e-06	26.8	0.8	1	23	482	504	482	504	0.99

Sequence Information

Coding Sequence: ATGGAGAATATATTAGATTTCTCTAAAATTTGTCGTACGTGTTTATTAGAAACAACAAATATGAGCTCCATATTTTTATCTAACGTGTTAGAAATGATTGATAATTGTACAGATATTAAgGTAACAAGAAACGATGGCTTGCCGGATCAAATTTGTTCACAGTGCGTTAAAATCGTTACAACATCTTTTGATTTCAAAACGCAGTGTCGAAAATCGGACAGTGTATTACATGAAATGCTGGAAAGAATCAAGTTGGGTTCTAATAGCGTTAAAATAGATGATAGTTCAGTGAAATTAGAGTCAGTACAAAAAACGTCAGAAATAAATTGCAGTGAAACTTCATCGATAAAATCTGAAACTCATCGAGAATGGGATACGTCTAGTGAGAAAAGCTGTACCGAAAAAGATGACGTACCGATATTATCCGCACCTTCGGAAGGTAAAAGTTCAGTTATTAAAAGGAAGTCTAGATATAATTCGGCCGGTCCGGTTTGGGATAACGATAATTTTAAATGCAAAGTGTGCGGAAAACAGTTGGTAAACAAATATTCATTATCGCGTCATATGGACACTCATAGGGACAAGAGAAAACACAGTGCGCTGTGTccgatttgcaaaaaagaattttttgaaaaaggaaACTTAACTAAACATATGCTTCGACATAAAGgcgagaaaaaatataattgcacCTTTTGCAAAAAAGGATTTTATGAACTCAGCGCGATGGCGTTCCATTCGAAAAAACATCACAGCGTCAAACCGGTCGAATGCAAAGTGTGTCGAAAAGAATTCACTCTGCAGATTCAACTCGAAGTACACATGAAATTGCATAACGAAAACCGATTTACTTGCAATACGTGCGGTAAAGAATGTTCTTCGAACAAATCGTTGAAATCCCATAACATGTTGCATATGACGCTAGATCCACATCTGTGCACGTATTGTAATAAATGGTTCAAATACGAGGCGAGTCTTCGAGTACACATCAGAAGGTTTCATCAAGGGCCGATCAAAAAAGAAATCTGTACCGTTTGCGGCAAAGCTGTAACGAACGTCAAACATCACATGCTGTTCGTTCATGCAACGGATCGGCCGTACAAATGCAACGACTGCGAAATGAGTTTTGCGAAAGAGTCTTTCTTAAAACTGCATTTGAGAACTCATTCGGGAGAATCGcgaatttataaaatactgTGTCCGGTCTGCGGTAGAATTTTGCAAAATTCTACGGCATTGCGAATTCACATGCGTATTCATACAGGTGAGCGGCCATTTGTGTGTCAAATGTGCGATAAGTCGTATAAAACCAGCTCGGCTTTGGCCGTACACAAACGTTCGCATACTGGGGATCGGCCGCACGAGTGCTCCGTATGCCATAAAAGATTCTTCACTAAGAAGTGCGTTCGGGTTCATCAGGTTGTACACACGGGCGAACGACCGTACCAATGCAAAGTGTGCGGCCAGGCTTTTGGTCAAAAGTCTACGCTTAAAACGCACATGAAAATTCATTGA
Protein Sequence: MENILDFSKICRTCLLETTNMSSIFLSNVLEMIDNCTDIKVTRNDGLPDQICSQCVKIVTTSFDFKTQCRKSDSVLHEMLERIKLGSNSVKIDDSSVKLESVQKTSEINCSETSSIKSETHREWDTSSEKSCTEKDDVPILSAPSEGKSSVIKRKSRYNSAGPVWDNDNFKCKVCGKQLVNKYSLSRHMDTHRDKRKHSALCPICKKEFFEKGNLTKHMLRHKGEKKYNCTFCKKGFYELSAMAFHSKKHHSVKPVECKVCRKEFTLQIQLEVHMKLHNENRFTCNTCGKECSSNKSLKSHNMLHMTLDPHLCTYCNKWFKYEASLRVHIRRFHQGPIKKEICTVCGKAVTNVKHHMLFVHATDRPYKCNDCEMSFAKESFLKLHLRTHSGESRIYKILCPVCGRILQNSTALRIHMRIHTGERPFVCQMCDKSYKTSSALAVHKRSHTGDRPHECSVCHKRFFTKKCVRVHQVVHTGERPYQCKVCGQAFGQKSTLKTHMKIH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01511283;
90% Identity: -
80% Identity: -