Xxan014983.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- Pli
- Assembly
- GCA_963575645.1
- Location
- OY754471.1:42635432-42651862[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.23 4.8 8.4 5.8 2 21 146 165 145 167 0.94 2 14 0.009 0.18 12.8 2.6 2 23 174 196 174 196 0.97 3 14 0.00047 0.0097 16.8 2.1 1 22 216 237 216 237 0.96 4 14 2e-05 0.00042 21.1 1.0 1 23 242 265 242 265 0.97 5 14 0.00023 0.0047 17.8 1.2 1 23 319 341 319 341 0.97 6 14 4.5 92 4.3 0.3 2 17 346 360 345 365 0.74 7 14 0.01 0.21 12.7 2.1 1 23 378 400 378 400 0.98 8 14 0.0011 0.023 15.7 1.3 1 23 406 428 406 428 0.98 9 14 0.00024 0.0048 17.8 0.9 1 23 434 456 434 456 0.95 10 14 0.00054 0.011 16.7 1.8 3 23 464 484 462 484 0.96 11 14 1.5e-05 0.00031 21.6 0.1 1 23 490 512 490 512 0.96 12 14 1.2e-05 0.00024 21.9 0.3 1 23 518 540 518 540 0.96 13 14 0.00024 0.005 17.7 5.2 1 23 546 569 546 569 0.96 14 14 0.035 0.71 11.0 3.0 1 23 575 597 575 597 0.92
Sequence Information
- Coding Sequence
- ATGAAACTTCACTATTTCAGATTGTTAATATATTTCGATAATTTCTTCCACAGCTATCCCTTGACCCAGGTCACGTTAGACGACAAGTTACCAAAAATAATATGCCGTAAATGTGCCGAttgcttaaaaaattattatgaatttaaaCTTGCATGTCACCAGACTGAAAGAGAGCTGCTAAAACTTTTAGATGAATCTGTATGCGAGTTAGATAATGAAAATAGTATAAAATCTGAATCATTGTGGGTTGAGCCCGAAGTCAGCATTAAGGATGAGCTAGAAGCGAATGATATTGTATTTAGTGAAGATGGACATGTCGACTCCGATGTGGATTACGATGATGGTTACAGTGTCGACAAAGAACTCGAGACTTCAAACGATCTCAAATTCGAAGAACCGGACAGTGCATTAACCGACGATGCGGAAAAACCGTGTCGGTGTAAGGAATGCAACAAATTGTTTCCGGAACGTAGCAAATTAGAACTTCATATGAAATGCCACAAAGTGAATAGGAAaccaaaatgtaaaatatgcagTAAAGTGTTTAATAAGAAGACTATATTGGATCGACATATGAAAAGAATGCATTTAAATTGTGAAGTTTCTTTGAAAGAAAATGAAAGAAATtcagaagaaaaaataaaatatcaatgtaaaatgtgcaaaaaatcttttcaaagGAAGTCTAAGTTAGATCTACATTTACAGACATGCTTgaagaaatttaaatgtaaaatatgcgaaaaatatttcatcGATAAAGAGAATTTAATAAATCATATAACTAAGATGCACAAAGGCTCTCGTATAGGCGAAGCAGAATTTATAACGAAGCATAATTCGGAAATTCGTGTAAAAACTGAATCGGAATCGAACGAAACTGCGAACTTGGAAACTGTCCTCGAATCGAATCTAAGTAAAGGAGacgataaaaagaaaataaccagaaatatttatgtttgtaaTATATGTCAACGATCGTTCAAGAAATTGTTTAATATTCAAAGACACATCGcatatcattttaaaaaaataaaatgtgaaaagtGTAATCaagaattttctaaaatcgactACGGAACTCATAGACAAATGTGTACGAATACGAAAAGCAATAATTCTTTCGGTGATTATTACTGCAGTAGGTGCGATAAGTATTTCGGTTTGAAATACAATTACGACCGACATATTTTGAGTCACCCCGAGAATCGCAGTTTCGAATGCGAAGTGTGTCATAAGCTGTACGGGGACGAAGTCGATTTAAGAAGGCATCGGAAAACTCACGGAGAATTAACGGGTTTCCATTGCGACACTTGCCCGAAAACTTTCGCCGATTTAGAAGAATTAAACAAACACACCGAGGAGCATCAAAATCCTCTACCGCACTTGTGTTCTGAGTGTGGAAAAAGATTCTTACAATATAAAAACTTGGCTGCACATTTACGGACACACACGGGTGAGAAACCTTTCCTATGTCCAACTTGCGGTAGAGCATTTGCTTTATCTGGAAACCTAAAAACTCATATTCGAATTCACAATGGTGAAAAACCGTATACGTGCAATGTCTGCAataagaGTTTTGCTCAGTGGGCGTCATTGCGAAGTCACAAGGTGGTCCATTCGAACGAACGGCGCTATGTCTGTCAGACATGTGGGGCTTCGTTCAAGCGCAGTCACACATTAAACAAACATCAACAACACCAACACATGGGCGTTCGTAATTATGCTTGTTCTATTTGTGAGAAACGATTTACAACTAAAAGTTCGTGCGATAAACATTACGTTATTCATACAGCTGCCAAGGTGTTGTGCACGGCGTCAGCTATGGTCAAAAGgaCGGATGGCACGGAATCTCCAATACTAGAGGAACAAGATGCTGGGCTTTCAGAAAAGCCAAAACCACTCATCAAATATGGAGAACTGGTTATATTAGGttACAATGGCTCTTTACCTCAAGGAGACCGCGGCCGGCGGAGAAGCAAGTTTGTTCTGTACAAACGGCAAACTGCCAACGGTGTTAAACGTTCTAAACACTATGTTGTCAAGACCCCGCACTCGTCTCAGGCCATTCTCGACGCCCGTCAGCATTCTATTTCGTACACGTTGACTCGCAATCAAGCCGTTATCGTTGAATACACACAGGATGACGAGACCGATATGTTTCAGatCGGGAGGTCATCGGAGCAGCCTATTGATTTCGTTGTCATGGACACAATTCCTGGGGATAAGACAGGAGAAAATAAAGTAGTACAGAGCACCATATCGCGGTTTGCTTGTCGAATTCTGTGCGACCGATCAAATCCGAAAGTAGCTCGTATTTACGCGGCCGGTTTTGACTCGTcgcgtaatatttttttagggGAAAAGGCAACAAAATGGCAAGAAAATCGTGAAATCGATGGCTTGACAACAAACGGTGTGCTGATTATGCATCCTCGAGGCTCGTTTTGCGGAGGGGCAGCTACGTGCGGTTGGTGGAGGGAGACTTCAGTTGGCGGCGGTGTATTTTCTCTACGTGAATCAAGATCGGCCCAGCAAAAAGGATTGATGGTCAGCGACGAGAGTAACATTCTGCAAGACGGAACGCTTATTGATCTGTGCGGAGCGACTTTGCTTTGGAGATCGGCCGAAGGACTTGCGGTTTCACCGAGCAAACGTGATTTGGAGAAACTGGTCGATGATATAAACGCTGGAAGACCGCAGTGCCCCGTCGGCCTGAATACGCTAGTGATTCCGCGCAAAGTCACTTCGGCCGAGAACCAACAACAGCAGCCATACGTCTATTTAAACTGCGGCCATGTTCAAGGTCATCACGATTGGGGTCAGGATAAAGATTCTGGCGCACGTCGTTGCCCGATGTGCTTggagGTTGGACCCGTCGTGAGACTGTGCATGGGGATTGAGCCAGCATTTTATGTGGATTCAGGTCCGCCAACGTTTGCATTTAATCCATGTGGTCACATGGCTACTGAGAAGACTGTCAAgtaCTGGGCTAATGCTGACATTCCACACGGCACTAATGGTTTTCATGCCGTGTGTCCTTTCTGTGCTTCGCCCCTATCTGGTACCCCGGGATACGCTCGCCTTATTTTTCAAGATAATGtcgattag
- Protein Sequence
- MKLHYFRLLIYFDNFFHSYPLTQVTLDDKLPKIICRKCADCLKNYYEFKLACHQTERELLKLLDESVCELDNENSIKSESLWVEPEVSIKDELEANDIVFSEDGHVDSDVDYDDGYSVDKELETSNDLKFEEPDSALTDDAEKPCRCKECNKLFPERSKLELHMKCHKVNRKPKCKICSKVFNKKTILDRHMKRMHLNCEVSLKENERNSEEKIKYQCKMCKKSFQRKSKLDLHLQTCLKKFKCKICEKYFIDKENLINHITKMHKGSRIGEAEFITKHNSEIRVKTESESNETANLETVLESNLSKGDDKKKITRNIYVCNICQRSFKKLFNIQRHIAYHFKKIKCEKCNQEFSKIDYGTHRQMCTNTKSNNSFGDYYCSRCDKYFGLKYNYDRHILSHPENRSFECEVCHKLYGDEVDLRRHRKTHGELTGFHCDTCPKTFADLEELNKHTEEHQNPLPHLCSECGKRFLQYKNLAAHLRTHTGEKPFLCPTCGRAFALSGNLKTHIRIHNGEKPYTCNVCNKSFAQWASLRSHKVVHSNERRYVCQTCGASFKRSHTLNKHQQHQHMGVRNYACSICEKRFTTKSSCDKHYVIHTAAKVLCTASAMVKRTDGTESPILEEQDAGLSEKPKPLIKYGELVILGYNGSLPQGDRGRRRSKFVLYKRQTANGVKRSKHYVVKTPHSSQAILDARQHSISYTLTRNQAVIVEYTQDDETDMFQIGRSSEQPIDFVVMDTIPGDKTGENKVVQSTISRFACRILCDRSNPKVARIYAAGFDSSRNIFLGEKATKWQENREIDGLTTNGVLIMHPRGSFCGGAATCGWWRETSVGGGVFSLRESRSAQQKGLMVSDESNILQDGTLIDLCGATLLWRSAEGLAVSPSKRDLEKLVDDINAGRPQCPVGLNTLVIPRKVTSAENQQQQPYVYLNCGHVQGHHDWGQDKDSGARRCPMCLEVGPVVRLCMGIEPAFYVDSGPPTFAFNPCGHMATEKTVKYWANADIPHGTNGFHAVCPFCASPLSGTPGYARLIFQDNVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -