Xxan022796.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754475.1:19196325-19199949[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 3e-05 0.00061 20.6 6.8 1 23 247 269 247 269 0.98
2 10 0.0001 0.0021 18.9 0.4 1 21 275 295 275 296 0.95
3 10 0.0049 0.1 13.6 3.0 1 23 303 325 303 325 0.99
4 10 0.00038 0.0078 17.1 8.9 1 23 331 353 331 353 0.99
5 10 7.2e-06 0.00015 22.5 3.9 1 23 362 384 362 384 0.97
6 10 1.2e-06 2.5e-05 25.0 3.8 1 23 390 412 390 412 0.99
7 10 1e-06 2.1e-05 25.2 2.0 1 23 418 440 418 440 0.97
8 10 7e-07 1.4e-05 25.7 1.2 1 23 446 468 446 468 0.99
9 10 8e-05 0.0016 19.3 3.6 1 23 474 497 474 497 0.95
10 10 0.0036 0.074 14.1 0.4 1 23 503 526 503 526 0.94

Sequence Information

Coding Sequence
atggAAGAAGTATCGGTAAATGGCTTAGGCTTAAGTACGATGTGCCGACTATGCTTATCAAAAGCCGTTACGACGGTAGATATATTCGCCTTTTCAAACAGATTAATGGATGAAGTAGCCAATGTAATTATGAAATGTGCTCCGGTTCAGGTAACGAGATGCGACGAGATGCCGAATTTCATCTGCCAATCATGCAACACTCAACTGGAGAAAAATCATCAGTTCCAGAAACAAATAATACAGTCTGACCAAACATTGCGACGCTATCTACAGCAAATACGAATTTCTAAGAAACAAATTAAGGCTGAATGTTCCAATTCGGTGTCGTCTAAGCAGTCCTCAATCCTGAACGCCGATACAAATACCACGATGAAATGCGAAACTTTAGAACTACAAGACGTCTTTGACATGAATATCGACATCAAAGATGAAATGCCTACAAATTATACTTCGGCATACAAAATTAACGTGGACATTCCtctaaaaactgaaataaaagaaCCACCTATCGACGATTCATTTATTCCAACGGAATATACTGCTAACTTAATAGACCGTTCATCTGAGGTTAACCACGACATTGAAATCGTACGTGAAAAATCAGAAATCAGAGAACCTTTCGACAGCTTTACAGGGAATCATTTTGCGAGTGTAACGAAACATCTTCCTAAAcgcgaaaataaaaacaaagttgCATCGGCAAAACATAAGAAGcccggaaaaaaaattaaaatgaagcataagtgtgacgtttgtaataaatgtttcagaaATTCGAATACTCTAAGAGTCCACCGGCGTATGCATAATGGTGAGAAAACATACAAATGCAACATCTGTACTAGAGTCTTCTCTTCTTTGGGTTACTTGAAAAGTCATAATCGTGTTcgcactggtgagaaaccatatcaatgtgatcTATGTGTTAAACACTTTAATGTACCGTGCGCTTTAAGTGTtcataaacgtacacataccgatgagaaaccatataagtgtgacgtttgtactAAGTGTTTCCGAAAGGCAGGCCACTTGCATAGTCATAAGCGTACACATACGGGTGAGAAACTATGTAAGTtacatcagtgtgacgtttgtggtAAGTGCTTCCCCAAATCTGATCAGCTGAAAAGGCACAAGCTCGTACATACCGAGGAGAAACcatataagtgtgacgtttgtaataagtgtttcaaagATTCTGTTAATTTAAAGATACACAAGCGCATGCATACTGGtaagaaaccatatcagtgtgacgtttgtggtAAGTGTTTCATTAGACCTGAGACGCTGAGAAGGCATCGGTTcgtacataccggtgagaaacgtTATCGATGTGGCGTTTGTGACAAGAGTTTCAACGATCCCTCTCATTGGAAGAGACACGAacgcatacatactggtgagaaaccacatCAATGCGAGATATGTGATAAACGATTCTCTCTGAACCAACACCTCAAAACGCATTTAAAGGGagttcataaaaaatctatacttTATAGTTGCACGTCCTGCGAtgagaaatttaaaattaaacgtgATTTAAATTTGCATATTGAAGAGGTTCACAATGTTTCCAaatga
Protein Sequence
MEEVSVNGLGLSTMCRLCLSKAVTTVDIFAFSNRLMDEVANVIMKCAPVQVTRCDEMPNFICQSCNTQLEKNHQFQKQIIQSDQTLRRYLQQIRISKKQIKAECSNSVSSKQSSILNADTNTTMKCETLELQDVFDMNIDIKDEMPTNYTSAYKINVDIPLKTEIKEPPIDDSFIPTEYTANLIDRSSEVNHDIEIVREKSEIREPFDSFTGNHFASVTKHLPKRENKNKVASAKHKKPGKKIKMKHKCDVCNKCFRNSNTLRVHRRMHNGEKTYKCNICTRVFSSLGYLKSHNRVRTGEKPYQCDLCVKHFNVPCALSVHKRTHTDEKPYKCDVCTKCFRKAGHLHSHKRTHTGEKLCKLHQCDVCGKCFPKSDQLKRHKLVHTEEKPYKCDVCNKCFKDSVNLKIHKRMHTGKKPYQCDVCGKCFIRPETLRRHRFVHTGEKRYRCGVCDKSFNDPSHWKRHERIHTGEKPHQCEICDKRFSLNQHLKTHLKGVHKKSILYSCTSCDEKFKIKRDLNLHIEEVHNVSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-