Xxan023046.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754475.1:21486275-21488520[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 4.7e-05 0.00097 20.0 4.8 1 23 392 414 392 414 0.99
2 10 0.0004 0.0083 17.1 3.8 1 23 420 442 420 442 0.97
3 10 3e-05 0.00062 20.6 3.6 1 23 448 470 448 470 0.99
4 10 2.9e-05 0.0006 20.6 3.0 1 23 476 498 476 498 0.99
5 10 0.0011 0.022 15.7 2.3 1 23 504 526 504 526 0.99
6 10 0.00017 0.0034 18.3 2.7 1 23 532 554 532 554 0.99
7 10 0.00024 0.005 17.7 5.7 1 23 560 582 560 582 0.98
8 10 2.7e-05 0.00056 20.7 3.8 1 23 588 610 588 610 0.99
9 10 2.7e-06 5.5e-05 23.9 2.9 1 23 616 638 616 638 0.99
10 10 4.5e-07 9.2e-06 26.3 3.7 1 23 644 666 644 666 0.99

Sequence Information

Coding Sequence
atggaAGATATGTTAATAAACGGATACGGCTTTAGTACAGTGTGCCGTTTGTGCTTATCTCACGACTCAACAGCAATAGACATATTtcgtttttcaaataaaatggaAAGCCAAATAGCTTATGCAATCATGAAGTGTGCTCCCGTTCAGATTACGAAACAAGACGAAATGCCGAAACTAATCTGCCGATTGTGCTACAATCAACTGGAGAAAAATCACGAGTTCCAGTCGCAAATAGTACAGTCGGACAAAACACTGCGGCACTATCTACAGAAACTGCGCGCTCCTGATAAACAAATGAAGACTGCTTGTTCCAATCAGCAGACCTGTGAGGATCTTACCAACCAAGATTTAACTGATACATGTGAATCTTTAGATCTTCATTGCGTGATTGATAATTATGTAACGGAATCAAAGAACGGCAATTCATTATCTTCAACCGAACGTGCTGATGATACATTGTCAGAGGCTGATAGTAATGAAATTAGCCGTGAAGACACAAAAGTCGGTTTTGATATCGTTGCATTGGATGAagaaataaatgttaaaaaccAAGAAAAAGAACCAGAAAACCAGCCATCAGCGGTTAGCATTAACGACGAAGTGTCTTTAAATTCCGAAAAGCAAATCGAGAATTCCATTCAGAAGCCTGTTGAGAACCTTTCAATTTGTGATAGTGATCCATTAATAACCCCAAAATGTGAACCTTTGGAACTCCAAGACGTGTTTGATGCGGACGATGTGACGAATGACGACTCATCATTTTCATCTGAAAATGCTGATGATATATTTTCAAAGAACAGCTACAGTGAAATTAGCTGTGAAGAGACTAAAGTCGACATCCGTGAGGCTAGCTTAGATCAAGATATGAGTGGCAACAGTAAAGAAAAAGAACCGGCAAAGTTCAATTCAGCGGATGGAATCAAGTGCGAAGCGTCTTCAAAACTCGACCGGCAAGTTAAAAATGTGTCGAATCGACCGGCAGATAACACAGGGAACGTTTCATCAAACGCGAACGGCAATGAAGTCAACTGCGAAGACATGAATACCAATATTGATTGCACAACGAGGATCTTCGGGTGTATTCGTTCTGCCGATGTAAAGATTGACAAACGTAAAgagaacaaaaataatacatcTATAAATCctataaaacacaaaaatggAAACcggtatcagtgtgacgtttgtaataagtgtttttctCTATCGGACCAATTCAAAGAccacaaacgtacacatactggtgagaggcCGTATAAGTGTACCGTTTGTACCTGTAGTTTCAGTCAAGCAAAGACTTTAAAAAGACACGAAACTGTGCATAAAagcgagaaaccgtatcagtgtgacgtctgTAATAAGTGTTTTGCCGAAtcaagatatttaaataaacacaaacgtGTACATAATAGCGTGAAACCGTATCGGTGTAATGTTTGTGATAAGTGCTATACTTTGGCAAGCAGTTTAAATAcgcacaaacgtatacataccggcgtgaaaccgtatcagtgtgacgtttgtaacaagcGCTTTTTCGAATTATACTGTTTGGCCGCTCACAAAcgtgtacatactggtgagaaattGTATCgttgtgacgtttgtaataagtgcttCGCTATGTCAAATCAGTTATATgttcacaaacgtatacatacaggtgtgaaaccgtatcagtgtgacgtttgtagtcGGCGCTTCAGTCAGTCAAGTCATTTCAACACTCACAAATATACACATACAGGCGAAAagccttatcagtgtgacatttgtaataagtgctaTACCCAATTTTCCAATTTAGTCAGTCATAAATTAACACATGCAAACatgaaaccgtatcagtgtgaagtTTGTAATAAGTGCTTTACTACTTCaggttatttaaatattcataaacgtatacatacgggtgagaaaccgtataagtgtgacgtttgtaataagtgcttTCCACAGTCAAGCAATTTAACTGCCCACAAACGTAAACATATGGATGTGAAACAATATCAGTGGAGCTTATAA
Protein Sequence
MEDMLINGYGFSTVCRLCLSHDSTAIDIFRFSNKMESQIAYAIMKCAPVQITKQDEMPKLICRLCYNQLEKNHEFQSQIVQSDKTLRHYLQKLRAPDKQMKTACSNQQTCEDLTNQDLTDTCESLDLHCVIDNYVTESKNGNSLSSTERADDTLSEADSNEISREDTKVGFDIVALDEEINVKNQEKEPENQPSAVSINDEVSLNSEKQIENSIQKPVENLSICDSDPLITPKCEPLELQDVFDADDVTNDDSSFSSENADDIFSKNSYSEISCEETKVDIREASLDQDMSGNSKEKEPAKFNSADGIKCEASSKLDRQVKNVSNRPADNTGNVSSNANGNEVNCEDMNTNIDCTTRIFGCIRSADVKIDKRKENKNNTSINPIKHKNGNRYQCDVCNKCFSLSDQFKDHKRTHTGERPYKCTVCTCSFSQAKTLKRHETVHKSEKPYQCDVCNKCFAESRYLNKHKRVHNSVKPYRCNVCDKCYTLASSLNTHKRIHTGVKPYQCDVCNKRFFELYCLAAHKRVHTGEKLYRCDVCNKCFAMSNQLYVHKRIHTGVKPYQCDVCSRRFSQSSHFNTHKYTHTGEKPYQCDICNKCYTQFSNLVSHKLTHANMKPYQCEVCNKCFTTSGYLNIHKRIHTGEKPYKCDVCNKCFPQSSNLTAHKRKHMDVKQYQWSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-