Basic Information

Insect: Xanthostigma xanthostigma
Gene Symbol: -
Assembly: GCA_963575645.1
Location: OY754468.1:38203119-38205278[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2.3 48 5.2 0.1 2 23 232 253 232 253 0.96

2 14 0.0074 0.15 13.1 0.6 2 23 257 279 257 279 0.96

3 14 0.00078 0.016 16.1 0.2 3 23 328 349 326 349 0.95

4 14 0.0023 0.047 14.7 1.8 2 23 354 376 354 376 0.94

5 14 0.0019 0.039 14.9 4.6 1 23 383 405 383 405 0.98

6 14 0.2 4 8.6 1.0 2 23 413 433 412 433 0.96

7 14 3.5e-05 0.00071 20.4 0.5 1 23 439 461 439 461 0.98

8 14 0.026 0.52 11.4 0.3 2 23 468 490 467 490 0.95

9 14 0.016 0.33 12.0 1.9 3 23 520 540 518 540 0.92

10 14 0.0027 0.056 14.4 0.2 1 23 545 567 545 567 0.91

11 14 6.2e-06 0.00013 22.8 0.3 1 23 573 595 573 595 0.98

12 14 0.0002 0.0041 18.0 4.6 1 23 601 623 601 623 0.99

13 14 1.8e-05 0.00037 21.3 2.9 1 23 629 651 629 651 0.96

14 14 2.5e-06 5.1e-05 24.0 0.7 1 23 657 679 657 679 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2.3	48	5.2	0.1	2	23	232	253	232	253	0.96
2	14	0.0074	0.15	13.1	0.6	2	23	257	279	257	279	0.96
3	14	0.00078	0.016	16.1	0.2	3	23	328	349	326	349	0.95
4	14	0.0023	0.047	14.7	1.8	2	23	354	376	354	376	0.94
5	14	0.0019	0.039	14.9	4.6	1	23	383	405	383	405	0.98
6	14	0.2	4	8.6	1.0	2	23	413	433	412	433	0.96
7	14	3.5e-05	0.00071	20.4	0.5	1	23	439	461	439	461	0.98
8	14	0.026	0.52	11.4	0.3	2	23	468	490	467	490	0.95
9	14	0.016	0.33	12.0	1.9	3	23	520	540	518	540	0.92
10	14	0.0027	0.056	14.4	0.2	1	23	545	567	545	567	0.91
11	14	6.2e-06	0.00013	22.8	0.3	1	23	573	595	573	595	0.98
12	14	0.0002	0.0041	18.0	4.6	1	23	601	623	601	623	0.99
13	14	1.8e-05	0.00037	21.3	2.9	1	23	629	651	629	651	0.96
14	14	2.5e-06	5.1e-05	24.0	0.7	1	23	657	679	657	679	0.99

Sequence Information

Coding Sequence: atgtattcacATCTTACAGCGTCGAATTATTTTACTGTTTGTCGTTTGTGTTTATCTGAAAATCAATTTAGGtcgttatttacaaaatataacgcGGATAATAACAACAAATGTTACGCTGAAATGATAATGGCGTGCTCCACCGTACAGgtAGAAGAGAATGATGGTTTGCCTTCAAAAATTTGTTGTGATTGcgtaaaaaaattgcaagatgCGTACAAATTCAAAGAAAAGTGTGAAGAAGTCGATAATGTTTTAAGATCTTTCAAATGCCAATATAACGACCAAGAAACTAAGTCAGATAAATTGTTTTCTCTGCTTTTCCCTGAAGAAAAACAGAATGACACAATATTACGCACTTTGCTGTCAGAGCCCAAAGGTAAACAAGACAGTGAATTGGTTTTTTTATCAGTGAAAGATGAGTCGAATTTAGAAACTGAAGCAAATTCCATATCAGAAAATGATAAAAAGAGAACCGTTAGTTTAGACAACGAACTCAGAAACGAATCTGAAGATGAATTTCAGAATTTTGACGACTCATCGAAATTCTATTGGAGCGACAGTAGCcgggaagaaaataatattgaaaatagcgatgacaatacaaaaataaaaacaagaagTGGCCAAAAACAACGGAGAAAGAATGCAGAAATCAAACGCAAAGAAAAAATTGAACGAACAATCAATCGGGTATGTGAAATCTGCAGCagaatactttttaataaagaaattttaagtgTACATATGGCTAAACATAAACACAATCGGTGTTTAGAATGCAATGGAAAATTCAGGAAAAAAAAGGAACTCATCGAACATATCAAGATAGAACATCCGATTCAAAAAAGTCCCGAAACGCAGCAGAGCGTCGCAGAAAACGAAGACGAAAGAGACGGAATCGACAGCGATCAATCTAATTGTCCCGATTACACGGACACCGGTGAAGTGAAACTTCCAAAATTCATATCGAACACGGATTGTCCGGAATGCGATTCGAAATTCACTTCGTTATCGGACTTACAAGAACACGTAAAACTGAACCATTCTGATTCGGGTGAATGTGAAGTGTGTACAAAAGGTTTCCACAGTAAAGACAGTTTAAAATTGCACATTAAAGACAAACATAAAACGTTAGTTTATAAACATCAGTGTCAAGTCTGCAgtaaattatttagatttaagtCGTTCTTACGTAACCACATGGTAACACACGCTCCTAATAAACCGGTCGTCAAGTGCGACGTATGCCATATCGTGATCTCAGCACAAAATTTACGCCGACACAAAATGAGGCACACGGGAGAGCAGCCCCATAAATGTCCCGTTTGCAATAAAGGATTCATTCAAAAACCCGATCTGACGTTGCATCTCGCTCGGCACGCCGATGCCAGAACGATCCCGTGCATGCACTGCGAGAAAGCGTTTTATGCCGAAGTGGAACTCAGAACGCACGTTCGCAACTCGCACATGGGCGACGGTAAAAAAAGACCGAGGACTATAAGAAAAAATCCAAAACCGATAGTTGCGGTCGCGAAGTTAGAATGCACGCATTTATGTAAGGTATGCGGAAGGGGATTCCCAACCAAGCAGAGATTAAAAAGTCACGAATTGTTTCacggagaaaaaaaatttttatgcagcgagtgcggtaatcGTTTTGCGACTCAAGCTATGCTGAATAATCACCGGGTAGCCCATACGGATATCAGACCGTATAAATGCGAGGTTTGCGGGAAAGCGTTCAAAAGATCGATGGAAGTCAAGACGCACATGGTCGTTCATAACGGTGTGAGGAAATTTAAGTGcaccgtttgtgaaaaaatgttcaaacaacCGGGTCATCTGCAGTGTCACATGTTGACGCACACTGAAGAGAAACCCCACGCCTGCAGCATGTGTGGAAAATGTTTTGCTTTGAAGAAAAATCTTAACGATCATATCAGAAttcatactggagagaaacccTACACGTGTCCCGTATGCGGTAAAGCgtttattaattcaaataacAGAAAACAACACTTAAAAACACACAATAAAGTTTAG
Protein Sequence: MYSHLTASNYFTVCRLCLSENQFRSLFTKYNADNNNKCYAEMIMACSTVQVEENDGLPSKICCDCVKKLQDAYKFKEKCEEVDNVLRSFKCQYNDQETKSDKLFSLLFPEEKQNDTILRTLLSEPKGKQDSELVFLSVKDESNLETEANSISENDKKRTVSLDNELRNESEDEFQNFDDSSKFYWSDSSREENNIENSDDNTKIKTRSGQKQRRKNAEIKRKEKIERTINRVCEICSRILFNKEILSVHMAKHKHNRCLECNGKFRKKKELIEHIKIEHPIQKSPETQQSVAENEDERDGIDSDQSNCPDYTDTGEVKLPKFISNTDCPECDSKFTSLSDLQEHVKLNHSDSGECEVCTKGFHSKDSLKLHIKDKHKTLVYKHQCQVCSKLFRFKSFLRNHMVTHAPNKPVVKCDVCHIVISAQNLRRHKMRHTGEQPHKCPVCNKGFIQKPDLTLHLARHADARTIPCMHCEKAFYAEVELRTHVRNSHMGDGKKRPRTIRKNPKPIVAVAKLECTHLCKVCGRGFPTKQRLKSHELFHGEKKFLCSECGNRFATQAMLNNHRVAHTDIRPYKCEVCGKAFKRSMEVKTHMVVHNGVRKFKCTVCEKMFKQPGHLQCHMLTHTEEKPHACSMCGKCFALKKNLNDHIRIHTGEKPYTCPVCGKAFINSNNRKQHLKTHNKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01511261;
90% Identity: iTF_01511261;
80% Identity: -