Xxan022555.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
POL
Assembly
GCA_963575645.1
Location
OY754475.1:16869015-16882219[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00026 0.0054 17.6 1.6 1 23 558 580 558 580 0.99
2 11 0.0057 0.12 13.4 5.7 1 23 792 814 792 814 0.99
3 11 7.8e-05 0.0016 19.3 6.5 1 23 820 842 820 842 0.99
4 11 1.8e-05 0.00038 21.3 7.5 1 23 848 870 848 870 0.99
5 11 4.3e-05 0.00088 20.1 1.0 1 23 876 898 876 898 0.99
6 11 0.0028 0.058 14.4 6.5 1 23 904 926 904 926 0.99
7 11 1.3e-05 0.00026 21.8 2.1 1 23 932 954 932 954 0.98
8 11 9.4e-07 1.9e-05 25.3 1.3 1 23 960 982 960 982 0.99
9 11 4e-06 8.3e-05 23.3 3.8 1 23 988 1010 988 1010 0.99
10 11 0.0062 0.13 13.3 8.6 1 21 1016 1036 1016 1038 0.95
11 11 1.3e-06 2.7e-05 24.9 5.2 1 23 1044 1066 1044 1066 0.99

Sequence Information

Coding Sequence
atGTCAATTGGCAAGATCGAAGCATTTGATTTAAAATCTGGAAAATGGTCGCTGTACATTCAGCGGCTAGAACAATATATTGCTGTAAATAAAATAGCAGCAGAATTAAAAATCGCAGCGTTATTATCCGTTGTGGGAGAAGAAACTTATGAACTAATTTGTGATCTATGCGATCCTGACAAACcagaaaccaaaacatgggatGAAATAGTTAAAACTGTCAAAGATCATATAAATCCAGCTCCGTCAGAGATAGCGGAACGATATAAATTTCGTCAACGTTATCAATCCAGTGACGAGAGTATAGCTGATTACGTTCAAGTTTTAAAACATTTGGCGAAAACCTGTAATTTCGGAAACCAATTGGAGACCAATTTACGAGACCAACTAGTCTCAGGTCTGCGAAATGATGCAATTCGATCCCGACTATTCACAGAAAAGATGTTGACCTACGGCAAAGCAGTGGAAATCTCCTTGTCTCTGGAGCAAGCTGAAAGAAATGCATTAGAAGCGGGGCCAAGCAGCATTAGTCATGTCAATAGGGTGCATATCGCAAGTTCCTCCGGTACAACCAGCCAGTCTTCATGTCGACATTGTGGTCTGAAAAACCATCAAGCAGATGTACTAATTCACTATAATCTAAGTTTGCCTCTTTTATTAGCGTGTGATGCGAGTTCTTACGGTCTTGGCGCTATTATTTCGCATAAATTACCCGAtggtaaagaaaaaattattgcttGTGCAAGTCGTACGTTAACAGATGCTGAGAAAAATTATAGCCAAATCTCTAAAGAAGCTTTAGCTATAATTTTCGGAGTGCGCAAATTTTATCAGTACCTATACGGACGACACTTTACCTTACTTTGTGATGCTAAACCGTTAATCTCAATTTTCGGGCCAAAGAAAGGCTTACCTCAAATGGCCGCAAACCGTCTTCAACGAATGAAAGAAATATCGATAATTGGATCTGGCTTGCGTtcaatgtgtcgattgtgcttatcgAGTGGCGTTGTGCTGTTAGACATATTTCAGCTTTCATCTACAATGAGAAATAGCGTGGCAGATGTAATCACGAAACGTGCTGCTGTCCAGATAACGAGAGGCGATGGGATGCCGAATTTCATCTGCCAATCATGTTACAATCAACTAGAGAAAACTCATCAGTTTCTGGTGCAAATAGAAAATTCTGATAGAGCACTGCGACGCTATTTTCAGCAATTATACACATCAGACAGTCCAATCAAAACTGAATGTTCTGTCCAGCCTTTTGAAAAGCATTTAATCCTTAACGCTAATAAAGATATCGTGAAATGTGAATCTTTAGAGCTCCATGATGAATTTGATATGGATCTTAGCTGGAAAGAGAACAAAGCTGCAAATTTTAttcaagaaattgaaaatatcgaGGAAATCCccttaaaatccgaaatcaaatTCGAACAGAtggatgataatttattaattccaaCTGATTCAGTTGATGACGCTTCATCTAACGGCGATAGAAATGAAATTACCTGCGAAGACACGAAAATTGATATTGGCCAATCATCGGAGATTTCGTGTTTACGTTCTGCAAATGCAAGTGAAAATTTCAGTAAGTGTGATGACatacaagaaaatatttcagtttATCGTCAGAAGCACAAAAATGCAAATGAATTGAAATCATATCAATGCGACATTTGCAGCAAACCTTTATCTAGCCGTTCGTCTCTCTATTATCATAAGCGAACACATACTGATATGTTTTCGTTTTCATCCAAAATGGGGAATAGAGTGGCTGGTGTAATCATGAAACGTGCAGCTGTTCAGATAACTAGAAACGATGGAATGCCGAATTTCATCTGCCAATCCTGTTACACTCAACTGGAGAAAACTCACCAGTTTCTGATGCAAATAGAAAATTCTGATAGAGCACTGCGAGGCTATTTTCAGCAATTATGCGCTTCTGAGAAACCAGTCAAAACTGAATGTTCTGTTCAACCTTCTGAAAATCATTTCATCCTTAACGCTAATAAAGATATCGTGAAATGTGAATCTTTAGAGCTCCATGATGAATTTGATATAGATCTTGATTGGAAAGAGACTGAATCTgcaaatttaattcaagaaaataatatcaaccaggaaatgtgtttaaaatttgaaatcaaagacgaaAAGATGGATGATAATTTCTCAATTTTAACAGAAAAAGTCGACGATCCGGTAAACGTTTCATCTAAAGCCGATGGAAATGAAATAAACTGCGAAGACACGAAAATTAGTATTGGTCACGCAGTCGAGAATACGTGTTTAGTTTCTGCAAATGTAACTGAAAAAACTCAtacaaatattttgataaatcgTAAGGAGCATAAATTGAAATCGTATCGATGCGATATTTGCAGCAAGTGTTTCTCCAGCCGTCAGGGTTGGCATTATCATAGGcgagtacatactggtgagagaccttatcagtgtgacctttgtaataagagtttctctCAGTTGTGCCATTTAATTAGACACAAACGCAgtcatactggtgaaaaaccttatcagtgtgacctttgtaataagtgtttctctcagttataccatttaaaaagacacaaacgtattcatactggtgagaaaccttatcagtgtgatctGTGTATTAAGAGTTTCTCTCAGTCATCTCAATTAAATGTTCACAAGCGTGTACATACCGGTGataaaccttatcagtgtgacctttgtaataagtgtttcctACGGTCACATGATTTAATTAAACACAAGCGTagtcatactggtgagaaaccttatcagtgtgatctgtgtaataagagtttctctCAGTCTAGCAGTTTAATTATTCACAAGCATATACATACCGGcaagaaaccttatcagtgtgatctgtgtaataagagtttctctCAGTCTAGCAGTTTAATTATTCACAAGCGTagtcatactggtgagaaaccttatcagtgtgatctgtgtaataagagtttctcaAAGTCATCTCATTTAAATGATCACAAGCGTGTACATACCGGTgggaaaccttatcagtgtgacctttgtaataaatgtttttctcaGGCATCGCATTTCATTAGTCACAAGCGTTgtcataccggtgagaaaccttatcagtgtgatctgtgtaataagagtttctctcagtcataccatttaaaaagacacaaacgtattcatactggtgagaaacctaaGTCACTgtaa
Protein Sequence
MSIGKIEAFDLKSGKWSLYIQRLEQYIAVNKIAAELKIAALLSVVGEETYELICDLCDPDKPETKTWDEIVKTVKDHINPAPSEIAERYKFRQRYQSSDESIADYVQVLKHLAKTCNFGNQLETNLRDQLVSGLRNDAIRSRLFTEKMLTYGKAVEISLSLEQAERNALEAGPSSISHVNRVHIASSSGTTSQSSCRHCGLKNHQADVLIHYNLSLPLLLACDASSYGLGAIISHKLPDGKEKIIACASRTLTDAEKNYSQISKEALAIIFGVRKFYQYLYGRHFTLLCDAKPLISIFGPKKGLPQMAANRLQRMKEISIIGSGLRSMCRLCLSSGVVLLDIFQLSSTMRNSVADVITKRAAVQITRGDGMPNFICQSCYNQLEKTHQFLVQIENSDRALRRYFQQLYTSDSPIKTECSVQPFEKHLILNANKDIVKCESLELHDEFDMDLSWKENKAANFIQEIENIEEIPLKSEIKFEQMDDNLLIPTDSVDDASSNGDRNEITCEDTKIDIGQSSEISCLRSANASENFSKCDDIQENISVYRQKHKNANELKSYQCDICSKPLSSRSSLYYHKRTHTDMFSFSSKMGNRVAGVIMKRAAVQITRNDGMPNFICQSCYTQLEKTHQFLMQIENSDRALRGYFQQLCASEKPVKTECSVQPSENHFILNANKDIVKCESLELHDEFDIDLDWKETESANLIQENNINQEMCLKFEIKDEKMDDNFSILTEKVDDPVNVSSKADGNEINCEDTKISIGHAVENTCLVSANVTEKTHTNILINRKEHKLKSYRCDICSKCFSSRQGWHYHRRVHTGERPYQCDLCNKSFSQLCHLIRHKRSHTGEKPYQCDLCNKCFSQLYHLKRHKRIHTGEKPYQCDLCIKSFSQSSQLNVHKRVHTGDKPYQCDLCNKCFLRSHDLIKHKRSHTGEKPYQCDLCNKSFSQSSSLIIHKHIHTGKKPYQCDLCNKSFSQSSSLIIHKRSHTGEKPYQCDLCNKSFSKSSHLNDHKRVHTGGKPYQCDLCNKCFSQASHFISHKRCHTGEKPYQCDLCNKSFSQSYHLKRHKRIHTGEKPKSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
-
80% Identity
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