Xxan022654.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754475.1:17610113-17616667[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.00011 0.0022 18.9 4.5 1 23 328 350 328 350 0.97
2 13 0.00017 0.0035 18.2 2.7 1 23 484 505 484 505 0.98
3 13 2.3e-05 0.00048 20.9 2.6 1 23 511 533 511 533 0.98
4 13 1.3e-05 0.00026 21.8 1.1 1 23 539 561 539 561 0.98
5 13 0.00016 0.0033 18.3 2.0 1 23 567 589 567 589 0.99
6 13 0.0007 0.014 16.3 6.6 1 23 595 617 595 617 0.98
7 13 0.025 0.52 11.4 2.2 1 23 623 645 623 645 0.97
8 13 5.8e-06 0.00012 22.9 1.2 1 23 651 673 651 673 0.96
9 13 0.0077 0.16 13.0 7.3 1 23 679 701 679 701 0.98
10 13 0.00024 0.0049 17.8 2.7 1 23 707 729 707 729 0.97
11 13 6.5e-05 0.0013 19.5 2.8 1 23 735 757 735 757 0.99
12 13 0.00033 0.0067 17.3 2.1 1 23 763 785 763 785 0.97
13 13 2e-05 0.00041 21.2 6.4 1 23 791 813 791 813 0.99

Sequence Information

Coding Sequence
ATGATCGACATGTTTACGTTTTTGCCCTGCTTGGGATATCAAATAATAGAACTCATAATGAAGTGTGCGCCTGTTCAGATAAAGAAACGCGACGGGAAGCCGAATTTCATCTGTCGATTATGTTACGCTCAACTGGAGAAAATTCACCGTTTTCAGATGCAAGTTGTACAGTCTGACAAAACTTTGCAATGCTATCTGCAGCAATTACACGCGTCTGATAAACAAGCCGAGCCTAATTGTTTTTTGCAAAGGCCTTCCAATGAGTCAGTAATCCACAACCCGTCTGATAGTGTCATGGAGGAACCACTATTAATGCAAAACTCTGATCAAGATTTCGTCGTGAAGCGTGAATCATTAGAACTTCTTGACGTGTTTGAAACTATGAACAGGAAAGAGAAAgaacttgaaaattttaacattgGAAACCAAATTTACGAGGAATTATCATTAAAATCCGAACAGCTGGATGATAATTCATTTATTTCTACAGAATATACTGAAAACGCTTTATCTGATTTTGACGAGAGTGAAATCGATCATGAATACACAGAAATCGACATTGGTGACACCAAAGTGGGTTTTGGAGTATCGGAGACCATTGAATATCTTAATCCAAGTAAAATCTCTGCGCATCATCGTAAATATGACGATGAAATTAGTAATAAAGAGTTTTTACAACCTGAAAGCAAAAGCCTTTTAACGTCTGTGAAATTCAACGACAATGAAATCAGCTATGAAAATGAGAAAATCGATAAAGGCAGCATTGTTGTGACTGAAGGAAAATGGAAAGACTTTGAGCGTCTTCATTTTCACGAATTTACAGACGATATAAACGAGTCAGAGTTTTCCTGTAACGACAGTGAGGTTAGCTGTGAAAATTTAAGAGTCGATAGAGATAGTGCAAACATAGAAAAATCACATCAGCctgatattaataataaacagccGATCAATTCACCTTTAAAGAGACATAAGAAATCGTATTCATGTGACATCTGTAACGAACATTTCAGTCGGCAATCCAGTTTAAATAACCATAAACATGTACATACTGGTGGGGAACAATATGGGTGTGATGTTTGTTCTACTAAATTGGAAACTAAACCTCAAGAAGATATGGAAAATTCAGAAGAAAGCTTTTGTGCATCTTCCTCTGCGGACATAGAATATATAAAGTGTGAGCCAAGACTCGACAGTTACTTGGATAGTGAGGAAAATATTCATCAAGAATATATCAATCCTGAACTTGAAGGTGTACCAGAAACTCTCTCATCGAGCGCTGATTTAAATGATTTAGGAACTAGTATTAACGAATCTTTTAAAAATCAGGCTACAGACAAAGAACCTGAAATATTCAACATTTGTAATGATAATAGTGATGACAATTATAAAAGTGATCACGCGTTATCTGCCAAGAAAAAACAGCATAAAAATTTAGAACAAGGACTTCATGAGTGCGAGATTTGTAAAAAACGTTTTGGTCGTTCAAATTTAAGTAGACACATGTTAACACACACGGGAGAAAAACCGTTTAAATGCGAAATTTGTAATAACCGCTTCACTCGActtagtaatttaaaaaaacacaatctTACTCATACAGGtgaaaaaccgtatcagtgtgacatttgtcagaAGCGTTTCTCCCGAAAAGGTAGTTTAAGTATTCATAATcttacacatactggtgagaagctcTATCAGTGTAACGTTTGTAGTAAAAATTTTGCTCAGATAGGTCATTTAAACACGCATAAACTcacacataccggtgagaaaccttatcagtgcaGTTTTTGCAGTAAGTGTTTCACACGACTAAACGATCTGAATATTCATTTGTGCTCGCACACTGGtaagaaaccttatcagtgtgacgtttgtaaaaaatattttgcccgAGCTGTTGATTGCAACAGGCACAAGATTATgcatactggcgagaaaccaTACCTGTGTGAAGTTTGTAAGAAAAGTTTCTCCCGACAGAGCAgtttaaatattcataaaattacacataccggtgagaaaccgtatcaatgcgaCGAATGTTTTAGGTGTTTTGGTCGATCGCACACTTTAAAAAGTCACAAACTTAAACACAATGCCGAAAAACCGTACCATTGCAATGTTTGTAGTAAACGGTTCTCTCAATTAGATAGTTTGAATTCACATAAACTTAtccatactggtgaaaaaccgtatcagtgtgatgtTTGTAGTAAGTGTTTTGCTCGACTTTACActttaaatattcataaactTACACATACCGCTGAAAAACCGCATCGTTGTGAAGTTTGTGATAAGTGTTTCGCCCTATCAACTGAACTGAATAAACACGCGttaatacatactggtgagaaaccatatcagtgtgacatgtgTAGTAAGAGTTTTAGTCAGTCGAGTCATTTAAATATCCATAAATGTACACATACTAGTGAGTAA
Protein Sequence
MIDMFTFLPCLGYQIIELIMKCAPVQIKKRDGKPNFICRLCYAQLEKIHRFQMQVVQSDKTLQCYLQQLHASDKQAEPNCFLQRPSNESVIHNPSDSVMEEPLLMQNSDQDFVVKRESLELLDVFETMNRKEKELENFNIGNQIYEELSLKSEQLDDNSFISTEYTENALSDFDESEIDHEYTEIDIGDTKVGFGVSETIEYLNPSKISAHHRKYDDEISNKEFLQPESKSLLTSVKFNDNEISYENEKIDKGSIVVTEGKWKDFERLHFHEFTDDINESEFSCNDSEVSCENLRVDRDSANIEKSHQPDINNKQPINSPLKRHKKSYSCDICNEHFSRQSSLNNHKHVHTGGEQYGCDVCSTKLETKPQEDMENSEESFCASSSADIEYIKCEPRLDSYLDSEENIHQEYINPELEGVPETLSSSADLNDLGTSINESFKNQATDKEPEIFNICNDNSDDNYKSDHALSAKKKQHKNLEQGLHECEICKKRFGRSNLSRHMLTHTGEKPFKCEICNNRFTRLSNLKKHNLTHTGEKPYQCDICQKRFSRKGSLSIHNLTHTGEKLYQCNVCSKNFAQIGHLNTHKLTHTGEKPYQCSFCSKCFTRLNDLNIHLCSHTGKKPYQCDVCKKYFARAVDCNRHKIMHTGEKPYLCEVCKKSFSRQSSLNIHKITHTGEKPYQCDECFRCFGRSHTLKSHKLKHNAEKPYHCNVCSKRFSQLDSLNSHKLIHTGEKPYQCDVCSKCFARLYTLNIHKLTHTAEKPHRCEVCDKCFALSTELNKHALIHTGEKPYQCDMCSKSFSQSSHLNIHKCTHTSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-