Basic Information

Insect: Xanthostigma xanthostigma
Gene Symbol: -
Assembly: GCA_963575645.1
Location: OY754475.1:16751364-16753079[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 7.5e-06 0.00015 22.5 0.6 1 23 236 258 236 258 0.98

2 12 8.2e-05 0.0017 19.2 1.5 1 23 264 286 264 286 0.98

3 12 1.4e-06 2.9e-05 24.8 4.0 1 23 292 314 292 314 0.98

4 12 8.8e-05 0.0018 19.1 4.7 1 23 320 342 320 342 0.98

5 12 0.003 0.061 14.3 4.0 1 23 348 370 348 370 0.99

6 12 0.00021 0.0043 18.0 2.5 1 23 376 398 376 398 0.98

7 12 0.0034 0.07 14.1 3.8 1 23 404 426 404 426 0.98

8 12 0.00015 0.003 18.4 3.1 1 23 432 455 432 455 0.94

9 12 9.2e-05 0.0019 19.1 2.4 1 23 461 483 461 483 0.99

10 12 4.2e-05 0.00086 20.1 1.4 1 23 489 511 489 511 0.94

11 12 0.00016 0.0033 18.3 2.8 1 23 517 539 517 539 0.98

12 12 4.1e-05 0.00084 20.2 3.8 1 23 545 567 545 567 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	7.5e-06	0.00015	22.5	0.6	1	23	236	258	236	258	0.98
2	12	8.2e-05	0.0017	19.2	1.5	1	23	264	286	264	286	0.98
3	12	1.4e-06	2.9e-05	24.8	4.0	1	23	292	314	292	314	0.98
4	12	8.8e-05	0.0018	19.1	4.7	1	23	320	342	320	342	0.98
5	12	0.003	0.061	14.3	4.0	1	23	348	370	348	370	0.99
6	12	0.00021	0.0043	18.0	2.5	1	23	376	398	376	398	0.98
7	12	0.0034	0.07	14.1	3.8	1	23	404	426	404	426	0.98
8	12	0.00015	0.003	18.4	3.1	1	23	432	455	432	455	0.94
9	12	9.2e-05	0.0019	19.1	2.4	1	23	461	483	461	483	0.99
10	12	4.2e-05	0.00086	20.1	1.4	1	23	489	511	489	511	0.94
11	12	0.00016	0.0033	18.3	2.8	1	23	517	539	517	539	0.98
12	12	4.1e-05	0.00084	20.2	3.8	1	23	545	567	545	567	0.98

Sequence Information

Coding Sequence: ATGGATAATAATCCATTTATTCCAATCGAATGCACAGATTATACTAATAAAAGTCAGGATAATGATATCAATTTTGAAGACAGGAAAGTTGATATTAGTGACATCAAAGAAACAGTTGACACATTGGGAAACATTGAAAGCTATCATTCTACGAAGATGATTAACCTTTCCCACAAATGTGATCAAAAATTGAGTGAGGTTGCTTGTTTAAAACCGGAAGAAGCGTATAATGTTCGAGTAAAGTTGGAACCAGTGGACGAAAGTTCATTAAATCTAACtgaagaaataaattataacattaCTTTTTCTAATAAAGATGACGGCTGTGAGAAAACAAACATTAATGTTGATAATATAATGACAAATACACCGAGAAATTGCGAGTGTTCTTCAAAAAGTGGTGATCATCCCtgtaaatgcaaaaataatacgaatgaGGAATTATTTATTAGATGTGAAGAATTATGtaatgttcaaataaaaaccGAGTCCTTGGATGACATTTCATTAATAACGACAGCAAATACTAATAAAACAGTTGATAGTTTATCCCAAAACTATGATATTAATGgcgaatataaaaacaataaatcgcCTGCTGACGCCATGGAACAGTTTGAAATTTCTCGATCTAGTGAAACGACCGAGCATTTTCATAGATCTGAAGACGACAACAAACCGAGTTCAGTAAATCAAGATAAACAATACCAGTGCGATGTTTGTAAACGGGGCTTTATTAGACGAGCTGATTTGAAAAGACACCAATTGTTGCATACCGATGAGCGACCATATAAGTGTAGCGTTTGTAAACGAGGCTTTAAAAGACAAACTGATGTAAAAATACACCAGTTATCACATACTGATGAACGACCACATAAGTGTAGTATTTGTAATAAAAGCTTCAGAAATGTTAACAATCTGAAAATTCACCAgcgtacacatactggtgagaaaccgtatcagtgtgatgtGTGTAATAAGTACTTTGCTCACTCTAATTCTTTGAAAAAACACAAAAGGCAACATTGTGAAAGAAAatcttatcagtgtgacgtttgtaatgaCTGTTTCAAAAGTTCTAGTCGTTTAAATACTCATAAACTTACACATACTGTCGAGAAGTCGTATCAATGTGAAATTTGCTTTAAATGTTTCAACCAGTTGGATCGCTTACAAGTTCACCGACttatacataccggtgagaaaccgcatcagtgtgatatttgtaaagAAGAGTTCGCACATTTGAGTAGATTAAAATCTCATAAATTAACTCACAGTGAGAAAAAACCGTATCACTGTGACATTTGCAATAAGTATTTTACGCGACTATATGACTTAAATAGACACTCGAAGTTaatacatactggagagaaaccataccagtgtgatgTATGTAATGAGTGTTTTAGACTGGCGAGTACATTAAATACACACAAGTTAACGCATACTAGAGAGAAACTGTATCAATGTGACGTCTGTAACAAACGTTTCACACGATTAGACAACATAAAAAGACACAAAGTTTtgcatactggtgaaaaacggtatcagtgtgacgtttgtagtaTGTGTTTTACCCAATCACAGTCTTTAAGTGCACATAAAAGGTTACATTCtggcgagaaaccgtatcagtgcgaTGTTTGTGGTCAGTGTTTTTCCCAGACTTATTCTTTGAAAGTTCACAAGAAACAACATGATGATGCCACTTAA
Protein Sequence: MDNNPFIPIECTDYTNKSQDNDINFEDRKVDISDIKETVDTLGNIESYHSTKMINLSHKCDQKLSEVACLKPEEAYNVRVKLEPVDESSLNLTEEINYNITFSNKDDGCEKTNINVDNIMTNTPRNCECSSKSGDHPCKCKNNTNEELFIRCEELCNVQIKTESLDDISLITTANTNKTVDSLSQNYDINGEYKNNKSPADAMEQFEISRSSETTEHFHRSEDDNKPSSVNQDKQYQCDVCKRGFIRRADLKRHQLLHTDERPYKCSVCKRGFKRQTDVKIHQLSHTDERPHKCSICNKSFRNVNNLKIHQRTHTGEKPYQCDVCNKYFAHSNSLKKHKRQHCERKSYQCDVCNDCFKSSSRLNTHKLTHTVEKSYQCEICFKCFNQLDRLQVHRLIHTGEKPHQCDICKEEFAHLSRLKSHKLTHSEKKPYHCDICNKYFTRLYDLNRHSKLIHTGEKPYQCDVCNECFRLASTLNTHKLTHTREKLYQCDVCNKRFTRLDNIKRHKVLHTGEKRYQCDVCSMCFTQSQSLSAHKRLHSGEKPYQCDVCGQCFSQTYSLKVHKKQHDDAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -