Basic Information

Insect: Xanthostigma xanthostigma
Gene Symbol: -
Assembly: GCA_963575645.1
Location: OY754475.1:21356329-21358459[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00064 0.013 16.4 1.7 2 23 212 234 211 234 0.96

2 15 9.9e-05 0.002 19.0 3.9 2 23 240 261 239 261 0.97

3 15 0.031 0.63 11.1 1.0 1 23 267 289 267 289 0.97

4 15 0.00016 0.0032 18.3 1.1 1 23 295 318 295 318 0.96

5 15 0.49 10 7.3 2.1 1 20 343 360 343 364 0.91

6 15 0.00017 0.0035 18.2 1.3 2 23 370 392 370 392 0.96

7 15 4.3e-05 0.00087 20.1 5.5 1 23 397 419 397 419 0.97

8 15 0.025 0.52 11.4 3.7 1 23 425 447 425 447 0.97

9 15 0.0029 0.059 14.4 4.3 1 23 453 475 453 475 0.97

10 15 0.00083 0.017 16.1 3.6 1 23 481 504 481 504 0.95

11 15 0.0054 0.11 13.5 0.5 1 23 530 552 530 552 0.94

12 15 4.3e-05 0.00089 20.1 0.7 1 23 558 580 558 580 0.94

13 15 9.4e-05 0.0019 19.0 1.9 1 23 586 608 586 608 0.99

14 15 3.3e-05 0.00068 20.5 0.3 1 23 614 636 614 636 0.98

15 15 1.1e-07 2.2e-06 28.3 1.3 1 23 642 664 642 664 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00064	0.013	16.4	1.7	2	23	212	234	211	234	0.96
2	15	9.9e-05	0.002	19.0	3.9	2	23	240	261	239	261	0.97
3	15	0.031	0.63	11.1	1.0	1	23	267	289	267	289	0.97
4	15	0.00016	0.0032	18.3	1.1	1	23	295	318	295	318	0.96
5	15	0.49	10	7.3	2.1	1	20	343	360	343	364	0.91
6	15	0.00017	0.0035	18.2	1.3	2	23	370	392	370	392	0.96
7	15	4.3e-05	0.00087	20.1	5.5	1	23	397	419	397	419	0.97
8	15	0.025	0.52	11.4	3.7	1	23	425	447	425	447	0.97
9	15	0.0029	0.059	14.4	4.3	1	23	453	475	453	475	0.97
10	15	0.00083	0.017	16.1	3.6	1	23	481	504	481	504	0.95
11	15	0.0054	0.11	13.5	0.5	1	23	530	552	530	552	0.94
12	15	4.3e-05	0.00089	20.1	0.7	1	23	558	580	558	580	0.94
13	15	9.4e-05	0.0019	19.0	1.9	1	23	586	608	586	608	0.99
14	15	3.3e-05	0.00068	20.5	0.3	1	23	614	636	614	636	0.98
15	15	1.1e-07	2.2e-06	28.3	1.3	1	23	642	664	642	664	0.99

Sequence Information

Coding Sequence: atggaTTTTGCCATAGACACCACCTGCCGCACATGTTTGTCCGAAGGagttttaaaatctatattcgAAAAAGTTAACGTCGAACACAACAAATTATTACTTTGTGAAATGGTGACAGAGTGTACTTCCGTTAAAaTAATTAAAGAAGACAAATTGccgaataaaatttgtaaaaaatgcatACAACAATTAAAACAAGCGTACTTGTTTGCGAGGCAGTGTCAAAACGCCGATGCAATTCTCCATTCTTACAGCAAAGGTGAGATTGAAGAGAAAGCGTCGAACAAAACAGAAGCGCGAGCTTGTCGTTCTCCGAAAGAAGAGGCTGAAAAAACGGCCGTCAAAGAAGAAGAAAGTAGCGACGTCGCCGACGATGTAGTCGATTTTGATCACAATGATTTCTGTGAAACCGATTACATTAACGGGGAAGAGAGAAACGAAAGATCGGAAAATGCCGTCAACGATCGCAACGAAAACGATTCGTGCGACTTGAAATCGGAAGAAGACAGTATAGATAACGATCCGTCCGAATCGGCAACCGACGAGACTGTGTCGATAAGTCGTTTGAAGGCGAAATTGAAATTAACCGACAAAGTGCTTTTACAGAAACGAAGAAAGAAACGTTGCTGGGACAAGTGCGAAAAATGTGACGAAACATTCGCCGATCGGCACAGCTACTACAAACATCAAATCTCGGAACATAGGGAAAAAGTCAATCAGTGTAATAAATGCGGAAAATGCTTCGCTCGAAAAGACAAACTGCTCACTCATTCAAAGATTCACGGCGGTGAAAAACCCCATTCGTGTTCCGTGTGCAACAGAGCGTTTCTGTTGCGCGCCTCCCTTACGCGCCACCTCTCCGTGCATTCCAGCGATGCGCCTTTCTCGTGCGAGCACTGTGGAAAACCGTACCGTACCGGCAAGTCGTTGCGCATTCACGTCAGGGAAATGCACTTGCAGACGAAATACGAGTCGAACGGAACGGTTGAACAGAAGAAATATTCGTACGACGAGGAGCTCAAcatgtttatttgtaaattgtGCGGTCGAGGCTTCCCGAGCGAATTGACGGCCCACCAACATTGCGTTCATCACGAAAAGCAGAGGAAGTGCGACAAGTGCGACGAAACGTTCGTTAAAAAATCAGACCTGTTGAAGCATAAGCTCTCGCTGCACGGTGAAAAGTATCATCAGTGCAGCGAGTGCGGCAAATGTTTCAAATTTCTATCGCTTCTTCAAAAACACGTAAAACTGCACACGGGGGAGAAGTTGTTCAGCTGCGAAAAATGCGGACGCAAATATTCTTGCTTGGGAAGCCTCAACAGACACACCAAACTGCACCGTGGCGAACGGCCGCACATGTGCCACTTCTGCTACAAGACCTTTTCTCAAGGCTCGACTCTCGCCGATCATCTCAAAGTGCATACGGGCGAAACGCCGTACAAGTGCCAGCATTGCGACAAGTCGTTCCGCACGTCCGGCATCCTGAGGATGCACGTCAAACAGAAACACTCCAAGGACATCGGcggcggcgtcggcggcgacaAGCAGCAGCCCAAACCCGCGACGGTCCGGAAGCTGTACAATTTTCTGTGCAGCACGTGCGGAAAGCGATTCAACACGACGCAAGCGCTCGACGTTCACAGCAACGTGCATACGGGCCTCAAGCCGTACCAGTGCATGACGTGCGGCAGGTCGTTCTCGCACCCGGCGTCACTCAAGACGCACGGCGTCGTACACACGGGCGAGAAACGATACAAGTGCGAGCTGTGCAACAGAGCGTTTGCGCTCAAGGGTCACGTGACGTACCACATGCGCACGCACACGGGCGAGAAGCCGTACTCGTGCGCGTTCTGCGGCAAGAGTTTCGCGCTCAAACTGAACCTGACCGTCCATCTGAGAATCCACACCGGAGAGACGCCGTACCAGTGTCCCGTCTGCGGAAAGGGATTCAAGAGCTCCAACAACATGAAGAAGCACCAGAGAAGTCACGCGAATAATAAAAAGGAGACGGCTCATCAGCCCTACGAAATTCCTTTTCAGTAG
Protein Sequence: MDFAIDTTCRTCLSEGVLKSIFEKVNVEHNKLLLCEMVTECTSVKIIKEDKLPNKICKKCIQQLKQAYLFARQCQNADAILHSYSKGEIEEKASNKTEARACRSPKEEAEKTAVKEEESSDVADDVVDFDHNDFCETDYINGEERNERSENAVNDRNENDSCDLKSEEDSIDNDPSESATDETVSISRLKAKLKLTDKVLLQKRRKKRCWDKCEKCDETFADRHSYYKHQISEHREKVNQCNKCGKCFARKDKLLTHSKIHGGEKPHSCSVCNRAFLLRASLTRHLSVHSSDAPFSCEHCGKPYRTGKSLRIHVREMHLQTKYESNGTVEQKKYSYDEELNMFICKLCGRGFPSELTAHQHCVHHEKQRKCDKCDETFVKKSDLLKHKLSLHGEKYHQCSECGKCFKFLSLLQKHVKLHTGEKLFSCEKCGRKYSCLGSLNRHTKLHRGERPHMCHFCYKTFSQGSTLADHLKVHTGETPYKCQHCDKSFRTSGILRMHVKQKHSKDIGGGVGGDKQQPKPATVRKLYNFLCSTCGKRFNTTQALDVHSNVHTGLKPYQCMTCGRSFSHPASLKTHGVVHTGEKRYKCELCNRAFALKGHVTYHMRTHTGEKPYSCAFCGKSFALKLNLTVHLRIHTGETPYQCPVCGKGFKSSNNMKKHQRSHANNKKETAHQPYEIPFQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01511154;
90% Identity: -
80% Identity: -