Xxan022831.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754475.1:19480526-19483990[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 8.9e-05 0.0018 19.1 2.8 1 23 148 170 148 170 0.98 2 19 0.00037 0.0077 17.2 3.2 1 23 176 198 176 198 0.97 3 19 4.6e-06 9.3e-05 23.2 2.5 1 23 204 226 204 226 0.98 4 19 0.18 3.6 8.8 0.8 1 23 275 298 275 298 0.92 5 19 0.00036 0.0073 17.2 2.7 1 23 346 369 346 369 0.95 6 19 0.085 1.7 9.7 0.8 1 23 522 545 522 545 0.95 7 19 0.021 0.42 11.7 3.2 2 23 568 590 567 590 0.96 8 19 0.016 0.33 12.0 0.3 1 23 599 621 599 621 0.97 9 19 0.92 19 6.5 3.7 1 21 624 644 624 645 0.95 10 19 0.0031 0.064 14.3 0.2 3 23 655 675 654 675 0.96 11 19 0.003 0.062 14.3 6.4 1 23 681 703 681 703 0.97 12 19 0.0038 0.078 14.0 2.2 1 20 709 728 709 731 0.94 13 19 0.0061 0.12 13.3 0.8 1 23 737 759 737 759 0.96 14 19 0.00067 0.014 16.3 1.3 1 23 765 788 765 788 0.94 15 19 0.0023 0.047 14.7 0.1 2 19 798 815 797 816 0.95 16 19 0.71 15 6.8 2.4 2 23 833 851 832 851 0.85 17 19 1.4e-05 0.00029 21.6 0.8 1 23 857 879 857 879 0.98 18 19 0.0029 0.06 14.3 7.3 1 23 885 907 885 907 0.97 19 19 1.5e-05 0.00031 21.5 0.6 1 23 913 935 913 935 0.98
Sequence Information
- Coding Sequence
- ATGGATGATTTTACACAAATGTGTCGTGTATGCATGTCTAAAGACaaggattttcaaaatatattcgaTGGTTATATAAACAACTCGTTTATACACACCGCCATTATGGAATGTGCTCCCGTTCAGaTATCTGCGGACGATAATCTACCATCGTTAATATGCAACAAATGCTTAAGTGATTTGAACACAGCGCATTCTTTCAAAAAATTGTGCGCAGAAACGGACACCGTCCTACGTGAATGTCTCAACGACAAGTTCGAAATCAAAACTGAAATTTTCGATGATTTTAAACGACTAATTTCGAAACCAACGATTTCAAGTGAAAACGACCGTACTCGCGAagaattcgaaaataaaatcgattttcaaaaacagTTATTTGTTGTCATTACAAAACTTCCAATCACAGATACCACTTGGAATCAGCCGCCGATAAAAACATACAGCTGCGAGCACTGTAGTAAAATATTTACCGATAAGAAAAGCTTGGATCAACACCTTTTAACACATATCGATATAGTTTTTTACGAATGCAAAAAATGTCGGAGAGTGTTcaaatcgaaaaaatcgttAACGATCCATTCGAAACTCCATCTGGGGCAACGACCGTTCGTTTGTGATATCTGCGGTAaagatttcattagaaaacacCATTTACAAAAACACGCTAACGTTCACTTCGAAATTAAACCGAAAACGGAGATTGCCGAACGTTCGCACGTAGCCAATAAACCGAAAATGTTCGGTtcggaatttttgaaatttttagagagcagtaaaaataaaaacaaagttgCAGTGACGCGTCGCGATGATGTTATGTTTCAGTGCGATTTATGTTATTCGaattataaagataaaaatgactTGTCGCAACACCTTACCGATGtacacaaacaaaagaacgacgAATCGAATAACAAAAGCGTCAACGAATCAGTCAAGACGTCAGACGATTGTTTTCGGAGCGATAAAGTTAATAGTGAACAAAACACTGTCGTTTATTCCAGTTCAGCCATAAACAAAACTGGAAAATTTCAGTGTCCTGAATGCGGGAACGAATATGCCCGAAAACATTATCTGAAAAggcattatttacaaaaacacaaGGAAAAACCGAGTGTAGTCGAAGACACAGATTTTAAGGTTGAGTATTTGGAATACGACGATTTGAAAAACGAAGATGCATTCTTAGACGACAATATCAACAAAAATTACATGGGAAATATGTCGAATAATATTATCGATTATATCGATCCTGAAAAATTAGACAAGAAAGTCAATCCGAACGATGAAATCGTCGAAGAATGGAAAGAAGATACAGTCGAAAGTTTGAATATGAACGACGAACCATGGGTTATGAGTACATACCAAAACGGCCATAAGTTTCGGTGTAAATTTTGCGATAGACATTATAATTGTAAAGAAGATGTtcaagaacattattttaatgtacataaAGTTACCGACAAAATGCAAAATCAATCAGACGATACGAAAGAAAACGCGATATCGGGAGACGAGCGGTTTTTTTCTGCGGTCGATGTAGACGAAGCCACTAAATACGAATGCAACTTTTGCGATAGCCAATTCTCGAATAAAGTTCAAGCGATGACTCATTATTTAAATGAACACGAAACAGACGAATCGGTAGCCGATAAGGATTACGTAACCGTTAGAGTGGACGGTATCGAAAAATTGCAGTGTAAATTATGCGACGGCATTCTGAAGAATAAATATCATTTGAAAAGACATCACGCGACCGTGCACACGTATTGTTCGGACAAAAAGGTTTTCGAGTGCGAAGCATGCCCGAAAGTTTTCGAGTCGAACGAAAGTCTACGATTTCACGTTAACAAGCACACTCCTTTTGTCTGCGTACACTGCAACGCGTATTTCGATAACCGGCACGATTTGAGCTACCACCGTAAACACAGCTGCGAAGAGAATAATCTCGAGCCATGCGAAATTTGCGGGAAGATTTTCAGAAAAAGGTATTTAGTCGACGTTCATCTAAAGTACCACGCTGGTGAGAAGTTGTACTGTTGCGAGTATTGCGGCAAAACTTTCTACACCAATTCGGATCGGCACAGACACGCGAAGCTACACTCGTCGAGCACGTTATTCCGATGCGAATTGTGTTTGAAAACTTTCAAGAGAAAAACCAGACTGAAAAACCATATCTGGTCTCATACCGGGGAACGGCCGTTCGTCTGTGAGGTTTGCGGCAAAACTTTCAGGTTGCGTGAAATCTTCAGGATGCATCGTAAAATCCACGCCGACGAGAAAAATTTCGCGTGCAAGTTCTGTTCGAAATCGTTCGCAACCGAAGCGAACATGAAACACCATATCGAAAACGTTCACGCGACGATAAACGAAGACGAACGACTCGAATGCGAAATCTGCGGGAAGCGTTTCATCAGTCGACGGTACCTGACGCTCCACAACGTTTGTCACGCCGATAAAAACGAACGACGCGACACCAGCGACCTTTCGAAGTGCGATATTTGCGGCAAGAGCGTGAAACATCTGAAGATACATTTGAAATATCATAGCAGAGAGAGTCAGTACAAGTGCCCTTATTGCGAACAGACGTACAAACGGAACGGCGACTTGCAACAACACGTTTCGAGTCATTTGGGTGTAAAAAAGCATGAGTGCCACGTCTGTTCGAAGACGTTTGCGTTCAGCAGGACGCTCCAAAAACATCTCTGCGTCCATACGGGTGAGCGTCCGTATTCGTGTGACGCGTGCGGCAAGCAGTTCATCAGAAAAGACAACTTGAATAACCACAGTCGTATCCATAAAACAGAATAA
- Protein Sequence
- MDDFTQMCRVCMSKDKDFQNIFDGYINNSFIHTAIMECAPVQISADDNLPSLICNKCLSDLNTAHSFKKLCAETDTVLRECLNDKFEIKTEIFDDFKRLISKPTISSENDRTREEFENKIDFQKQLFVVITKLPITDTTWNQPPIKTYSCEHCSKIFTDKKSLDQHLLTHIDIVFYECKKCRRVFKSKKSLTIHSKLHLGQRPFVCDICGKDFIRKHHLQKHANVHFEIKPKTEIAERSHVANKPKMFGSEFLKFLESSKNKNKVAVTRRDDVMFQCDLCYSNYKDKNDLSQHLTDVHKQKNDESNNKSVNESVKTSDDCFRSDKVNSEQNTVVYSSSAINKTGKFQCPECGNEYARKHYLKRHYLQKHKEKPSVVEDTDFKVEYLEYDDLKNEDAFLDDNINKNYMGNMSNNIIDYIDPEKLDKKVNPNDEIVEEWKEDTVESLNMNDEPWVMSTYQNGHKFRCKFCDRHYNCKEDVQEHYFNVHKVTDKMQNQSDDTKENAISGDERFFSAVDVDEATKYECNFCDSQFSNKVQAMTHYLNEHETDESVADKDYVTVRVDGIEKLQCKLCDGILKNKYHLKRHHATVHTYCSDKKVFECEACPKVFESNESLRFHVNKHTPFVCVHCNAYFDNRHDLSYHRKHSCEENNLEPCEICGKIFRKRYLVDVHLKYHAGEKLYCCEYCGKTFYTNSDRHRHAKLHSSSTLFRCELCLKTFKRKTRLKNHIWSHTGERPFVCEVCGKTFRLREIFRMHRKIHADEKNFACKFCSKSFATEANMKHHIENVHATINEDERLECEICGKRFISRRYLTLHNVCHADKNERRDTSDLSKCDICGKSVKHLKIHLKYHSRESQYKCPYCEQTYKRNGDLQQHVSSHLGVKKHECHVCSKTFAFSRTLQKHLCVHTGERPYSCDACGKQFIRKDNLNNHSRIHKTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -