Xxan022895.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754475.1:20071336-20072589[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.1e-07 1.2e-05 25.9 3.3 1 23 101 123 101 123 0.96 2 11 4.7e-05 0.00097 20.0 4.9 1 23 129 151 129 151 0.96 3 11 9.6e-09 2e-07 31.6 0.8 1 23 157 179 157 179 0.98 4 11 0.0011 0.023 15.7 1.1 1 23 185 207 185 207 0.97 5 11 1.7e-05 0.00036 21.3 3.8 1 23 213 236 213 236 0.97 6 11 9.1e-06 0.00019 22.2 2.0 1 23 252 274 252 274 0.97 7 11 2.1e-05 0.00043 21.1 4.3 1 23 280 302 280 302 0.97 8 11 0.00016 0.0034 18.3 5.7 1 23 308 330 308 330 0.97 9 11 4.8e-05 0.00097 20.0 0.9 1 23 336 358 336 358 0.97 10 11 0.00028 0.0057 17.6 3.3 1 23 364 386 364 386 0.94 11 11 6.7e-05 0.0014 19.5 3.1 1 23 392 414 392 414 0.98
Sequence Information
- Coding Sequence
- ATGCCGCCTAGAAAAtcaataaattcaattaaaaagagTGCCATATCTGTGACTTCGCCGTACGACATAGTAGAATTAGATATGAAGGAAGGTTCGTTGGAAAATGTCGATATAAATCCTTTCTCGTACGAAGAAGATCCGCTAAACACGGATCATTACAATGACCCGACGGAATGCACGGCCGACAGTTCGCTCGGTGTTTATTGCGAGACCAGTCTGGGAAAAACCGACAGCGACGActcagaagaagaagaagacgcGTCGACCGCCGACCAATCTGTGCCGAAAACCGAAAGTTCGCACGTATGCGACGTTTGCGACAAGTCTTTCTCGCGCCAAAGCCACTTAAAGATTCACCAACTTCTTCACACGGGCATAAAACCATACGAGTGCGATGTTTGCCAAAAGAAATTCAACAGACCTCACCATCTAAAAAGACACAACATGCTTcatacaggtgagaaaccgtacGAGTGCGACATCTGCGGCAAGAGTTTCACCACGTCGAGTAACCTGAACAGTCACTACAAAGTTCACAGCACAAtaaaaccgtaccagtgtgaagTATGCTTCAAGCGATTCAAGAGTCCCAACTACGTAAACGTTCACAAACTACTTCATGTCGGTCAAACGCCGCATCAGTGTGAAGTGTGCAACAAAGGTTTCAGCAGTGTTAGCAACCTAAACCATCACAAACGCATGATGCACGCCGACGACGAATATCTACATCACTTGCACGTCGGTGAGAAGCAGTTCCGATGCGAAATTTGCGACAAGTGTTTCGTCCGCGTGAACGACTTGAAACGACACAAAATTGTCCATACGGGCGAGCGGGCGTATCGGTGCGACGTCTGCAACAAATGTTTCAGTCGATCGAATCATCTGGCGGCACACAAACTGCTACATACCGGGGAGAAGCCGTACGAGTGTGACGTTTGCTACAAGAGATTTGTTCGATCGCATCACTTGAAACGACACAAACTGCTACACAGTGACGAGAAACCGTTCACGTGTGAAGTTTGCAATAAAGGTTACACGGAAGCGAGCCATTTGAGGATACATCAAATACAGCATACCGGCGAGAGACCGTACCGATGTGACGTTTGCCATAAGTGTTTCGGCCAGTCGATCGATTTGAAAAGACACAGTGTtatacatactggagagaaaccctataagtgtgacgtttgtatcAAGAGTTTTAGTCGAGCGAGCCATTTGAAAACCCACAAGTTATCGCATGCGGACGATTAA
- Protein Sequence
- MPPRKSINSIKKSAISVTSPYDIVELDMKEGSLENVDINPFSYEEDPLNTDHYNDPTECTADSSLGVYCETSLGKTDSDDSEEEEDASTADQSVPKTESSHVCDVCDKSFSRQSHLKIHQLLHTGIKPYECDVCQKKFNRPHHLKRHNMLHTGEKPYECDICGKSFTTSSNLNSHYKVHSTIKPYQCEVCFKRFKSPNYVNVHKLLHVGQTPHQCEVCNKGFSSVSNLNHHKRMMHADDEYLHHLHVGEKQFRCEICDKCFVRVNDLKRHKIVHTGERAYRCDVCNKCFSRSNHLAAHKLLHTGEKPYECDVCYKRFVRSHHLKRHKLLHSDEKPFTCEVCNKGYTEASHLRIHQIQHTGERPYRCDVCHKCFGQSIDLKRHSVIHTGEKPYKCDVCIKSFSRASHLKTHKLSHADD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01511112;
- 90% Identity
- iTF_01511112;
- 80% Identity
- -