Xxan023327.2
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754476.1:4572170-4574426[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.9e-05 0.0004 21.2 1.3 1 23 287 309 287 309 0.99 2 12 1.8e-05 0.00037 21.3 3.9 1 23 315 337 315 337 0.99 3 12 0.00028 0.0058 17.5 3.1 1 23 343 365 343 365 0.99 4 12 8.8e-06 0.00018 22.3 1.4 1 23 371 393 371 393 0.99 5 12 1.8e-05 0.00037 21.3 3.9 1 23 399 421 399 421 0.99 6 12 0.00013 0.0027 18.6 4.4 1 23 427 449 427 449 0.98 7 12 5.4e-06 0.00011 23.0 3.0 1 23 455 477 455 477 0.99 8 12 3.4e-05 0.0007 20.4 3.2 1 23 483 505 483 505 0.99 9 12 0.00025 0.0051 17.7 3.8 1 23 511 533 511 533 0.98 10 12 0.00028 0.0058 17.5 3.1 1 23 539 561 539 561 0.99 11 12 3e-06 6.1e-05 23.8 2.7 1 23 567 589 567 589 0.99 12 12 1.8e-05 0.00037 21.3 3.9 1 23 595 617 595 617 0.99
Sequence Information
- Coding Sequence
- atgACAGAAATATCGGTGAATGGCGACGGCTTAAgtacaatgtgtcgattgtgcttaaGGAGAGGTGTTACGCTGTTAGACATATTTTATTTCTCATCAATGGAATGTGAAGTAGCGGATGTAATAATGGCATTCGCTCCAGTTCAGATAACGAAAGGCGACGAGATGCCGAATTTCATCTGTCAGTTATGCTACACTCAAGTGGAGAAAATTCAACTGTTTCAAAAGCAAGTAGTAGAGTCCGATAAAATTTTGCGACGATATTTGAAACAGTTACACACTAATTCCAATAATCAAATCAACAATGATTGTTCCCTCGAAAAACTTTCTGAAAGTCCTTTGATCGATATCCCTAACAAAGATTTCACCGTAAAGGGTGAACCTCAGGAGCTTCAGGACATATTATTTGACATGGATGCCAACCTGAATGAAAAGTcacttgtaaattttaattcaacagacaaaattaataatgaaatatgTTCACGATCTGAAATCAATGAAGAAAGGACGGATGATAACTCACTGTTTCCAACTGACTGTGCTGATGACATAGAAACTTTATCCAAATATTATGATGATAGTGAAATCAATTTTGAAGATTCAAAGATGGATATAGGAGAAACTAAAGTAGGTTTCGAGATTGGTCTCAACTTGAAGGAGACAGGACTTGCAACTTTTAATTCAACAAATGCAATTAACGACGGAATGTCTTTAAAATGCGGAATTAAACAAGAGCCGATGATTGAACATTTTTCTACTTTAACTGAATGCGTTAATAACACAGTAAACGCTTCATCTAATGTCGACGTGATTAAAAACAGCTGCCAAGATAAAAAGAGTGCTGGTGACAAACCGTATCAATGCGACATTTGTAATTTGCGTTTTAACGTGCGTGGGAGTTTAAGAAGACACAAACGAATGCAtgctggtgagaaaccgtaccaatgcgacgtttgtaataaatatttcagtTCGTTACAGCATTTAAACAGACACAAACGAatacatactggcgagaaaccgtatcaatgctacgtttgtaataaatattttagtttgttACACAATTTAAACGCACACAAACGAatacatactggcgagaaaccgtatcaatgtgatgtttgtaataagtattttaaCCAGCTTGCGAATTTAAACTCTCACAAACGAATGCAtgctggtgagaaaccgtaccaatgcgacgtttgtaataaatatttcagtTCGTTACAGCATTTAAACAGACACAAACGAatacatactggcgagaaaccgtatcattgtgatgtttgtaataagCATTTTAACCAGCTTGCGAATTTAAACTCTCACAAACGAatacatactggcgagaaaccgtatcaatgtgatgtttgtaataagCATTTTAACCAGCGTGCGGATTTAAACAAACACAAACGAatccatactggtgagaaaccgtaccaatgcGATGTTTGTAATAAGAATTTTTCTTTGTCATGCGATTTAAACAGACACAGACGAATACATGctggagagaaaccgtatcattgtgatgtttgtaataagCATTTTAACCAGCTTGCGGATTTAAACTCTCACAAACGAatacatactggcgagaaaccgtatcaatgctacgtttgtaataaatattttagtttgttACACAATTTAAACGCACACAAACGAatacatactggcgagaaaccgtatcaatgtgatgtttgtaataagCATTTTAACCAGCTTGCGAATTTAAACAGACACAAACGAATACAtgcaggagagaaaccgtaccaatgcgacgtttgtaataaatatttcagtTCGTTACAGCATTTAAACAGACACAAACGAatacatactggcgagaaaccgtatcaatccGATATTTCTAATAAGCATTTTAACTag
- Protein Sequence
- MTEISVNGDGLSTMCRLCLRRGVTLLDIFYFSSMECEVADVIMAFAPVQITKGDEMPNFICQLCYTQVEKIQLFQKQVVESDKILRRYLKQLHTNSNNQINNDCSLEKLSESPLIDIPNKDFTVKGEPQELQDILFDMDANLNEKSLVNFNSTDKINNEICSRSEINEERTDDNSLFPTDCADDIETLSKYYDDSEINFEDSKMDIGETKVGFEIGLNLKETGLATFNSTNAINDGMSLKCGIKQEPMIEHFSTLTECVNNTVNASSNVDVIKNSCQDKKSAGDKPYQCDICNLRFNVRGSLRRHKRMHAGEKPYQCDVCNKYFSSLQHLNRHKRIHTGEKPYQCYVCNKYFSLLHNLNAHKRIHTGEKPYQCDVCNKYFNQLANLNSHKRMHAGEKPYQCDVCNKYFSSLQHLNRHKRIHTGEKPYHCDVCNKHFNQLANLNSHKRIHTGEKPYQCDVCNKHFNQRADLNKHKRIHTGEKPYQCDVCNKNFSLSCDLNRHRRIHAGEKPYHCDVCNKHFNQLADLNSHKRIHTGEKPYQCYVCNKYFSLLHNLNAHKRIHTGEKPYQCDVCNKHFNQLANLNRHKRIHAGEKPYQCDVCNKYFSSLQHLNRHKRIHTGEKPYQSDISNKHFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -