Xxan022612.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754475.1:17277519-17284912[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00043 0.0088 17.0 5.8 1 23 296 318 296 318 0.98
2 12 2.8e-07 5.8e-06 27.0 3.9 1 23 324 346 324 346 0.99
3 12 0.00012 0.0024 18.8 8.5 1 23 352 374 352 374 0.99
4 12 9.4e-06 0.00019 22.2 4.9 1 23 380 402 380 402 0.99
5 12 0.0046 0.095 13.7 7.2 1 23 673 695 673 695 0.98
6 12 2.8e-05 0.00057 20.7 5.7 1 23 701 723 701 723 0.99
7 12 7.4e-07 1.5e-05 25.7 1.8 1 23 729 751 729 751 0.99
8 12 2.2e-05 0.00046 21.0 6.2 1 23 757 779 757 779 0.99
9 12 1.1e-05 0.00022 22.0 4.9 1 23 785 807 785 807 0.99
10 12 6.8e-05 0.0014 19.5 4.8 1 23 813 835 813 835 0.98
11 12 7.1e-05 0.0015 19.4 3.7 1 23 841 863 841 863 0.98
12 12 0.00051 0.01 16.7 3.0 1 23 869 891 869 891 0.96

Sequence Information

Coding Sequence
ATGAAAGAAATATCGATAATTGGATCTGGCTTAACtacaatgtgtcgattgtgcttatcaaCTGGCATTACACTGTTAGATATGTTTACGTATTCATCCAAAATGAGGAATAGAGTGTCAGGTGTAGTCATGAAACGTGCTGCTGTTCAAATAACTAGAGGTGATGGGATGCCGAATTTCATCTGCGAATCATGTTACAATAAACTGCAAAAAACTCACCAGTTTCTAACGCAAATAGAAAATTCTGATAGAGCACTGCGACGCTATTTCCAGCAACTATACGCATCAGACAGTCCAATCAAAACTGAATGTTCTGTTCAGCCTTCTGAAAAGCATTTAATCTCTGACACTAATACAGATATCGTGAAATGTGAATCTTTAGAGCTCCATGATGGGTTTGATATGGATCTTAGTTGGAAAGTGACTGAACCCGccaatttaattcaagaaaataaaaataacgaagaaatttctttaaaatccgaaattaaaTTCGAACAGACGGATgataatttatcaattttagTAGAGTCAGTTGACCACACAGATCTTGGTTGGAAAGAGAGAGAACCCGCCGATATCATtcaagaatataaaaataacgaagaaaagtctttaaaatccgaaatcaaatTCGAAAAGAtggatgataatttattaattctaacgGAACCAGTTGATGACACGGTAAGCGCTTCATCTAACGGCGATGGAAATGATATTAGCTGCGAAGATACGAAAATTAATATAGGCCACGCATCGGAGATTTCGTGTTTAAGTTCTGCgaatgtaactgaaaattttagTAAGTGTGAtgacaaaaaaagaaaagaacacATTTCTATTTATCGTCAGAAGCACAAAAAAGCAAATGAATTAAAAACGTATCACTGCGACGTTTGCAGCAAGTGTTTCTCCAACCGTTCGGCTTTAAATTATCATAAGCTAACACATACTGGcaagaaaccttatcagtgtgacatttgtaataagtgtttctctcagtCATCCAATTTAAATAGTCACAAGCGtatacacactggtgagaaaccatatcagtgtgatctttgtaataagtgtttcacacAATTAAGCCATTTTAATAATCACAAGCGTAGACATACTGGcaagaaaccttatcagtgtgacatttgtaataagtgtttctttcAGTCATACAATTTAAATAGTCACAAGCGtatacacactgATATGTTTACGTATTCATCCAAAATGAGGAATAGAGTGTCAGGTGTAGTCATGAAACGTGCTGCTGTTCAAATAACTAGAGGTGATGGGATACCGAATTTCATCTGCGAATCATGTTACAATAAACTGCAAAAAACTCACCAGTTTCTAACGCAAATAGAAAATTCTGATAGAGCACTGCGACGCTATTTCCAGCAACTATACGCATCAGACAGTCCAATCAAAACTGAATGTTCTGTTCAGCCTTCTGAAAAGCATTTAATCTCTGACACTAATACAGATATCGTGAAATGTGAATCTTTAGAGCTCCATGATGGGTTTGATATGGAACTTAGTTGGAAAGTGACTGAACCCGccaatttaattcaagaaaataaaaataacgaagaaatttctttaaaatccgaaattaaaTTCGAACAGACGGATgataatttatcaattttagTAGAGTCAGTTGACCACACAGATCTTGGTTGGAAAGAGAGAGAACCCGCCTATTcaattcaagaaaataaaaattacgaagaaatttctttaaaatctaaaatcaaATTCGAAAAGAtggatgataatttattaattctaacagAACCAGTTGCTGACACGGTAAGCGCTTCATCTAACGGCGATGGAAATGATATTAGCTGCGAAGATACGAAAATTAATATAGGCCACGCATCGGAGATTTCGTGTTTAAGTTCTGCgaatgtaactgaaaattttagTAAGTGTGatgagaaaaaaagaaaaaaaaacatttctatttaTCGTCAGAAGCACAAAAAAGCAAATGAATTAAAATCGTATCACTGCGACGTTTGCAGCAAGTGTTTCTCCTACCGTTCGGTTTTAAATTATCATAAGCGAAcacatactggcgagaaaccttatcagtgtgatgtttgtaataagtgtttctctctgTCATCCCATTTAAATAGTCACAAGCGTATACAcaccggtgagaaaccatatcagtgtgatatttgtaaaaagCGTTTTATTCAGTCATCCAATTTAAATAGTCACAAGCGTATACAcaccggtgagaaaccatatcagtgtgatatttgtaataagtgtttcacacAATTAAGCAATTTTTATAATCACAAGCGTAGACATGTTGGTGAgagaccttatcagtgtgacactTGTAATAAGCGTTTCGCTCAGTCATATCATCTAACTAGACACAAacttacacatactggtgagaagccttATCAATGTGATCTTTGTAAAAAGCGTTTCATTCAGTCATCCGATTTAAATAGACACAAGCATAAacataccggcgagaaaccttatcagtgtgaccgtTGTAGTAAGTGTTTCTCTGACATaggcaatttaaataaacacaaacgtttacatacaggtgagaaaccttatcaatgtgacctttgtaataagtgtttctctctgTCATCCAAATTAAATGACCATAAACTGGCACACtcgtga
Protein Sequence
MKEISIIGSGLTTMCRLCLSTGITLLDMFTYSSKMRNRVSGVVMKRAAVQITRGDGMPNFICESCYNKLQKTHQFLTQIENSDRALRRYFQQLYASDSPIKTECSVQPSEKHLISDTNTDIVKCESLELHDGFDMDLSWKVTEPANLIQENKNNEEISLKSEIKFEQTDDNLSILVESVDHTDLGWKEREPADIIQEYKNNEEKSLKSEIKFEKMDDNLLILTEPVDDTVSASSNGDGNDISCEDTKINIGHASEISCLSSANVTENFSKCDDKKRKEHISIYRQKHKKANELKTYHCDVCSKCFSNRSALNYHKLTHTGKKPYQCDICNKCFSQSSNLNSHKRIHTGEKPYQCDLCNKCFTQLSHFNNHKRRHTGKKPYQCDICNKCFFQSYNLNSHKRIHTDMFTYSSKMRNRVSGVVMKRAAVQITRGDGIPNFICESCYNKLQKTHQFLTQIENSDRALRRYFQQLYASDSPIKTECSVQPSEKHLISDTNTDIVKCESLELHDGFDMELSWKVTEPANLIQENKNNEEISLKSEIKFEQTDDNLSILVESVDHTDLGWKEREPAYSIQENKNYEEISLKSKIKFEKMDDNLLILTEPVADTVSASSNGDGNDISCEDTKINIGHASEISCLSSANVTENFSKCDEKKRKKNISIYRQKHKKANELKSYHCDVCSKCFSYRSVLNYHKRTHTGEKPYQCDVCNKCFSLSSHLNSHKRIHTGEKPYQCDICKKRFIQSSNLNSHKRIHTGEKPYQCDICNKCFTQLSNFYNHKRRHVGERPYQCDTCNKRFAQSYHLTRHKLTHTGEKPYQCDLCKKRFIQSSDLNRHKHKHTGEKPYQCDRCSKCFSDIGNLNKHKRLHTGEKPYQCDLCNKCFSLSSKLNDHKLAHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-