Basic Information

Insect: Xanthostigma xanthostigma
Gene Symbol: -
Assembly: GCA_963575645.1
Location: OY754469.1:9786345-9787841[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00085 0.017 16.0 2.3 2 23 72 94 72 94 0.97

2 15 0.023 0.46 11.5 0.4 2 23 101 122 100 122 0.95

3 15 0.00053 0.011 16.7 2.1 1 23 129 151 129 151 0.98

4 15 0.00025 0.0052 17.7 1.5 1 23 155 178 155 178 0.96

5 15 5.9e-05 0.0012 19.7 0.3 1 23 183 205 183 205 0.98

6 15 0.0002 0.0042 18.0 0.9 3 23 218 239 217 239 0.96

7 15 0.037 0.75 10.9 0.3 2 23 246 267 245 267 0.94

8 15 0.00028 0.0058 17.5 0.3 2 23 277 298 276 298 0.97

9 15 0.00034 0.0069 17.3 2.5 1 23 302 325 302 325 0.97

10 15 0.01 0.21 12.7 0.2 1 23 330 352 330 352 0.95

11 15 0.028 0.58 11.2 3.4 3 23 363 383 362 383 0.98

12 15 0.00051 0.01 16.7 1.0 2 23 388 409 387 409 0.96

13 15 4.8e-05 0.00098 20.0 1.9 1 23 415 437 415 437 0.98

14 15 2.2e-05 0.00046 21.0 0.4 1 23 443 465 443 465 0.98

15 15 7.9e-05 0.0016 19.3 1.0 1 23 471 494 471 494 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00085	0.017	16.0	2.3	2	23	72	94	72	94	0.97
2	15	0.023	0.46	11.5	0.4	2	23	101	122	100	122	0.95
3	15	0.00053	0.011	16.7	2.1	1	23	129	151	129	151	0.98
4	15	0.00025	0.0052	17.7	1.5	1	23	155	178	155	178	0.96
5	15	5.9e-05	0.0012	19.7	0.3	1	23	183	205	183	205	0.98
6	15	0.0002	0.0042	18.0	0.9	3	23	218	239	217	239	0.96
7	15	0.037	0.75	10.9	0.3	2	23	246	267	245	267	0.94
8	15	0.00028	0.0058	17.5	0.3	2	23	277	298	276	298	0.97
9	15	0.00034	0.0069	17.3	2.5	1	23	302	325	302	325	0.97
10	15	0.01	0.21	12.7	0.2	1	23	330	352	330	352	0.95
11	15	0.028	0.58	11.2	3.4	3	23	363	383	362	383	0.98
12	15	0.00051	0.01	16.7	1.0	2	23	388	409	387	409	0.96
13	15	4.8e-05	0.00098	20.0	1.9	1	23	415	437	415	437	0.98
14	15	2.2e-05	0.00046	21.0	0.4	1	23	443	465	443	465	0.98
15	15	7.9e-05	0.0016	19.3	1.0	1	23	471	494	471	494	0.96

Sequence Information

Coding Sequence: atgaattttaatttattgaatgagAAGAAACCCTGTGAATTGTGGTCGACTGTATTTGTTGAAAATGAGAATGAAACTGAAACAGTTCTACaggatggtgttgaaaatttaaatgaaactgAAACAGTTCTACAGGATGGTTTTTTAGAAGAAAGTAAACCACGactcgtgaacgaaaatttttcaTTGCCCACGTCAGATGAAACGACTGCTACGTGcgattattgtaataaatccTTTCAAAGTGTTTCGAAAATGGAAAGACACAAAAGAAGCATGCATTTGAATAAAAAGATGTCCGAATGCAATGAGTGTGGTATTAAAGTTCTCAGTTCAAATTTGAGAAGACACAAAAGATATGTGCACGAAAAAAAAGACGAAATCCACCAATGTGATATTTGTGGAAACAAGTACTCCAACGAATTGACGCTGAAAGAGCACCAAAGAAGGCACCTCAAACCGTTCAGCTGTAATATTTGCGATAAGAAGTTGACCACAAAACATTCTTTGGATATTCATATTCAAAATATACACGAAGGAAGAAAGTATCGTTGCGATATTTGCGATAAGGTGTTTAATTCGGAACGGGGACTGTTATTACATCGAAAAGGGCACTTTTCGGCGCACAAGTCGGAAGAAACGGCTGTGGCGTGCGACATTTGCAATAAATCGTTTAAAAGCGCCATTCTAATGAGACGACACAAACGCAACCTGCATTTGAATAAACAGATGTCCGAATGCAATGTATGCGGTATTAAAGTTCGCAGTGCCAGTTTGAAAAGACACAAAAAGTATATCCACGAAAAAACGGACAAAACACACGAATTGGAGTGCGACATTTgtggaaataaatattcaaatgaagTTACATTGAAAGTGCATCAGAAAAGACATCTCGACCCGTTCAGCTGTAATTATTGCGATAAGAAGCTGACCACAAAACATTCTTTGGATCTTCATATTCAAAGTATACACGAAGGAAGGAAGTATAATTGCGATATTTGCGATAAGGTGTTTAATTGGGAAAAGGGATTGTTGGAACATCGAAAACTGCACGACTCCACCTTTAAGCCGTTCAGCAGAGCGTGTGAGAAGTgcggaaaaatattaaatacaagaTGCAGATATAGACGCCATTTGCAGACGCATCAAGGCGGATGTCCGTGCGAGGTGTGCGGCGCCGTTTCGAAAAATCCCGAATGTTTAAAGAGCCACATGTTGACTCATACCGGAGTCAAAGCATTTTCCTGTAAGTTTTGTGGTAAGAAATTTGCTCGCAGTAACACTGCGATGGTGCATCAAAGAACACATACAGGGGAGAAACCCTACGAGTGCACTGTTTGCGGCAAGAAGTTCACCCAAAGAACTCCTCTAGTTATTCACACGAGGGGGCATTCCGGGGAGCGCCCTTATAACTGCAATCTTTGTACTGAGTCGTTCACTAATAAAACACTTTTGAATTCGCATTTGCAAAATATTCATCAGattgttaaataa
Protein Sequence: MNFNLLNEKKPCELWSTVFVENENETETVLQDGVENLNETETVLQDGFLEESKPRLVNENFSLPTSDETTATCDYCNKSFQSVSKMERHKRSMHLNKKMSECNECGIKVLSSNLRRHKRYVHEKKDEIHQCDICGNKYSNELTLKEHQRRHLKPFSCNICDKKLTTKHSLDIHIQNIHEGRKYRCDICDKVFNSERGLLLHRKGHFSAHKSEETAVACDICNKSFKSAILMRRHKRNLHLNKQMSECNVCGIKVRSASLKRHKKYIHEKTDKTHELECDICGNKYSNEVTLKVHQKRHLDPFSCNYCDKKLTTKHSLDLHIQSIHEGRKYNCDICDKVFNWEKGLLEHRKLHDSTFKPFSRACEKCGKILNTRCRYRRHLQTHQGGCPCEVCGAVSKNPECLKSHMLTHTGVKAFSCKFCGKKFARSNTAMVHQRTHTGEKPYECTVCGKKFTQRTPLVIHTRGHSGERPYNCNLCTESFTNKTLLNSHLQNIHQIVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01511150;
90% Identity: -
80% Identity: -