Xxan023041.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754475.1:21474167-21475894[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.39 8.1 7.6 4.7 1 23 121 143 121 143 0.96
2 16 9e-06 0.00018 22.3 2.5 1 23 152 174 152 174 0.98
3 16 2.4e-05 0.00049 20.9 1.1 1 23 184 206 184 206 0.98
4 16 2.3e-05 0.00046 21.0 0.2 1 21 212 232 212 233 0.95
5 16 0.00043 0.0088 17.0 3.4 1 23 240 262 240 262 0.96
6 16 0.0012 0.025 15.5 2.3 1 23 266 288 266 288 0.97
7 16 0.012 0.24 12.5 0.8 1 23 290 312 290 312 0.95
8 16 2.2e-06 4.5e-05 24.2 2.0 1 23 321 343 321 343 0.99
9 16 0.00011 0.0023 18.8 0.6 1 23 349 371 349 371 0.96
10 16 0.00044 0.0091 16.9 1.9 1 23 377 399 377 399 0.99
11 16 5.9e-05 0.0012 19.7 2.4 1 23 405 427 405 427 0.99
12 16 2.5e-05 0.00052 20.8 4.8 1 23 433 455 433 455 0.98
13 16 0.008 0.17 13.0 0.7 3 23 463 483 461 483 0.95
14 16 0.0064 0.13 13.3 4.4 1 23 489 511 489 511 0.97
15 16 0.28 5.8 8.1 0.4 1 20 517 536 517 538 0.92
16 16 0.14 3 9.0 2.0 1 23 546 568 546 568 0.97

Sequence Information

Coding Sequence
ATGTCTGAAAATGCTGGATTAAAAACAGAACAAAGCTTAATAAAACGCGAAGATATGAACCCCACTGATGTACAGCACGTTAGTATAAAGAAAGAGTCAACAGACGATGATTTAATGTATCAAACAGACGTACAGCGAGGCGTCGAATACCCCATTGAAATAACTGACACTATTTTTATTAGACAAGAATATTCCGGGTTGAAGTTAGAAACAAGTGCAAGTGTAACTGACagtgtttttattatacaaGAACATTCCGGCGTGAAGCTAGAAACAAATGGATCGTTTAACGATAACAATACGGTAGGCGGCCATGATGAAAACACTGATGTGAAGCCAGTTATAGATCCTGGACTAAATCACTGTTGTGACGTTTGCAGCAATTCATTTACTGATTTTAACGAACTCGATAAACATAAGCTATCGCACGGTGtaaataaaaacagaaaaacacACAAGTGTAACATTTGTGAGAAAACATTCCCGCGTCCTTCCAGGTTAAAGAAACACGAACTTACACACGAACTTGCGCATACACCCCAAAAATCGTATCAGTGTAACATTTGTGAGAAAACATTCCCGCAGGCTTTCAGGTTAAAGAAACACGAacttacacacacacaccaaaaaccgtatcaatgtggcATTTGTGACAAGAGATTTGCTAGCTTGTCGTCATTAAGAAACCATAATCGCATTCGTACCGGTGAGAAACGTTATCAATGCTATGTttgtcaaaaaagtttttcagacaattgcGCTTTCAGGAGACACACAGCAGAGCACAACAAAAATTATAAGTGTAATGtctgtgaaacttttttcacaaGTCACGGGGCTTTAAAGTCACACAAGCTAGAGCATAGATTTAAATGTGATATGTGCGAGAGAAGCTTTCCACTATTAGTAACTTTAAACAATCACAAGTTCCTCCACGACGAAATTATCGATCGAAAACCGTTTAAATGCGATCTTTGTGAAAAGgctttttcacaaaattattcattaaaaatccaTAAACGTACGcatacaggtgagaaaccttaCCCGTGCGGTATTTGTGACCAGAGTTTTTCGGATACTCGTAAACTGAAAAAACACAGAGACGAGCACGATGACACCAAACAAtttaagtgtgacgtttgtgcaAAAAGGTTTGTCCAGTTCAGTGATTTCAAGTTGCACGAGCGACGTCACATTGAAGACACACCGTTTAAATGTGACGTGTGCCAAAAACGGTTTACCGGAACGGAAACTTTGAAGAAACATAAACGGGTCCATACCGGCGGGAAACCTTTTGAATGCGACCGTTGCGAAAAAACTTTTCGCTCGCCGAGTTGTCTAAAGAgacacaaacaaacacacttcGGCGAGGATCTGCATTTGTGTGAGTTTTGCGGCGAACTGTTCGCGCGATCGTTTGATTTAGAACAACACAAACTTGTACATACAGGCGAGAAACCgcataagtgtgacgtttgcagtaAGCGGTTTAAGCTGCGcgataaatttgaaaaacacAAACTTGTGCATGCCGGGCAAAAACCGCACGTGTGCGATATCTGCGATAAGTTGTTCTGGCGAGAGAACGAGTTCAACAAGCACAAACTAGTAAGAAACTGTGGTAAGAAACCGCACAAATGTGATGTTTGCAGTATGCGATTTAGGTGGAACGTTACTTTACAAATGCACAAACGAGCGCATAATACAGTACAGGCTGTAGATTGA
Protein Sequence
MSENAGLKTEQSLIKREDMNPTDVQHVSIKKESTDDDLMYQTDVQRGVEYPIEITDTIFIRQEYSGLKLETSASVTDSVFIIQEHSGVKLETNGSFNDNNTVGGHDENTDVKPVIDPGLNHCCDVCSNSFTDFNELDKHKLSHGVNKNRKTHKCNICEKTFPRPSRLKKHELTHELAHTPQKSYQCNICEKTFPQAFRLKKHELTHTHQKPYQCGICDKRFASLSSLRNHNRIRTGEKRYQCYVCQKSFSDNCAFRRHTAEHNKNYKCNVCETFFTSHGALKSHKLEHRFKCDMCERSFPLLVTLNNHKFLHDEIIDRKPFKCDLCEKAFSQNYSLKIHKRTHTGEKPYPCGICDQSFSDTRKLKKHRDEHDDTKQFKCDVCAKRFVQFSDFKLHERRHIEDTPFKCDVCQKRFTGTETLKKHKRVHTGGKPFECDRCEKTFRSPSCLKRHKQTHFGEDLHLCEFCGELFARSFDLEQHKLVHTGEKPHKCDVCSKRFKLRDKFEKHKLVHAGQKPHVCDICDKLFWRENEFNKHKLVRNCGKKPHKCDVCSMRFRWNVTLQMHKRAHNTVQAVD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-