Xxan022919.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754475.1:20376510-20379425[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 7.9e-06 0.00016 22.4 0.5 2 23 345 367 344 367 0.95 2 14 4.5e-05 0.00092 20.0 2.0 1 23 488 511 488 511 0.91 3 14 2.1e-05 0.00042 21.1 1.2 1 23 520 543 520 543 0.98 4 14 0.18 3.7 8.7 1.1 1 23 554 576 554 576 0.94 5 14 4.5e-05 0.00092 20.1 1.2 2 23 588 609 587 609 0.97 6 14 2.7e-05 0.00056 20.7 6.0 1 23 616 638 616 638 0.98 7 14 0.0086 0.18 12.9 0.2 2 23 646 665 646 665 0.97 8 14 9.2e-05 0.0019 19.1 4.0 1 23 671 693 671 693 0.97 9 14 0.0022 0.046 14.7 2.1 2 23 699 721 698 721 0.89 10 14 0.067 1.4 10.1 1.0 1 23 726 749 726 749 0.97 11 14 0.00097 0.02 15.9 0.3 1 23 755 778 755 778 0.96 12 14 2.8e-06 5.7e-05 23.8 0.6 1 23 784 806 784 806 0.98 13 14 6.2e-08 1.3e-06 29.1 2.4 1 23 812 835 812 835 0.98 14 14 0.00036 0.0074 17.2 1.8 1 23 841 864 841 864 0.97
Sequence Information
- Coding Sequence
- ATGGAAAAGAAACTACTAATTGAAGCAGATGGGTTAAAAATGGATATGTGTCGATTCTGTTTAAGTAAGGATGCACAATTAGCACACGTTTATAGCGCTTCAAAAACACTTGGATGCACAATAGCAGAAGCTGCAATGGAGTGTACCACTGTTGAGATATCTCTGAACGATGGCATGCCACTGTACGTCTGCAAAAATTGCTATCGTAAACTCCAAGACGTTCACCAGttcaaaaaaatggttttaaagTCCGACGCCGTGTTAAGAACTTACATCAGACAGCtgcgttttaaaaaaagcacaataAGTAGAAACTATCCTGCTAAAGACGAGCCTCTGGGCTTCGACGAAACGCAATGTACAGACCAAAGTAGAGACGATGAGATAATGACTGAAGATAAGGAAATTGATCGAGGCAGCGATATTGTCGAAGGACAAAGAGAAATCGGCAATGAAAAGAGTCAAACAGAAAATGTGATCGGAAACGATCAAATAATAATTCGAGTTCACGACGCCATCGACAACATTAATGCATCTTTTGAAAAACAAGCCTTTAGTGTAACCCCAAAAGGCGAAAAATTGTCTGCAGATAATTTCAGTTCACGAAGTAATTTAACATCGAATTCACCGGAAGAATCTTTAGAGAAACGAGACAACTTACCAAGTAATGATTCTATTGAACAGATAATTTCCACCAATTCAGCTAATCACAGTTTGGAAATGCAAATCGATGAACCTTtagcaattacagatattacaCACCGCAATCTATTGGACAGTAAATCTAATGTTCAGGAAATTAGTGGAAATGCTTTGATTGATCATAATTCAGACAGTGCTGTGGAAATGGAGGAAAGGAATGATTTTGACGACTGGTATTCAGTAGAAGGGTGGAAGAATGATACTTCTGAAGTGGAATCGGACAATGATGGAAACACTGATTTAAACCGTAAAAAAATTTGTACGACATCCGATAagaccaaaaataaattacgcaAATCAGTTTTGACAAATAATGCAAACACGAATTTGCAGTGTGAAATATGCGAAAAAAGATTTGCTCGAAAAGATGGTTTGCGAAggcatttgaaaaatattcatcGCTTAAACAAACCAGAAATATCAAACATATTAGGAAAAAAGACCTCCTCGAAGGAAAATGATGACTCGAACAGTAAGTCGACTGAAAAGTTAACTTCGACCAGTTCAACTGACCAGAGTTTGGAAACACAAAGCGAAGTGTCTTTAGAAAAAACAAATCATGAAGATATATCGGACGCTAATAAACGCGAGGATCAAGAAAACAGTGGAAATTCTATGACAGACCATATTTCAGAAAATGTAGAAATGGAAGCAACAAACTCTTCGATAGAAGATGATTTGGACGACCGGCATTCAGATGAAGAGGGGTCGGAAGAAGATAATTCTGAAAACGAATCTTACGAGAATAAAAGAATCGATTTCAAAtgtgaaatatgtaaaaaatcctATGCTACCAAAAATAATTTACGAAGACATAATTTGGAAAAACATGGAAGCAATTTAACAAAAGATGAATTTAAGTGTGAAAAATGCGAAAAAAACTATGTTCGAAAAGAGAGTTTACGTATACATATGACAACAGTCCatgaatcaaataaaaatgaGAAAGAAGTCGACTACAGCTGCAATACTTGTAATGAAAAGTTTGAAGAACGTCGCGAATTTTACATCCATGAAGTCAGACACTTCGATAAGAATTACCAACCGGGCAAACCTATTCAGTGCAATGTGTGCGGGAAATTGTTTAAGAAactatataaattaaaagaGCACATCAGGAGACATGACGACGACGATAGGCCTTTTCAATGCACTAAATGTGATAAAAAATTCAAGACTAAACACGAATTAGCAAGTCACCAACGATTCCACGGAGATACTAAATTATGCCCCGTATGTCCCATTTGTGGAAAAGCTGTGAAATATAACTTAAGTCAGCATATACGACGtcattcaaaaaacaaaaacttcaTGTGTCAGAAATGTGGCAAAAAGTTCGAAACTATGTACCACTTAAAACGACATACAGAAATTCACGATGGAAAAATGATGGAATGTAAAATTTGCAACAAAAGTTTTAAagggaaaacattattaaatgccCATAATATAAATTGTCACCACGGAAAAGAATTTAAATGTaacatttgtttaaatatttacagtTCGAAGCAAACTTTAAGCATTCACAATAAAACAGTTCACGATAAAAAACGTACGTTTGATTGTtctgaatgtaaaaaaatattttcttctccAATGGGTTTAATGTTGCATAAAAAATCAGCCCATAGCAGAGCGAAACCTTTTGAATGTCAAGAATGCGGTAAAGGTTTCTCTCGCAAGGATTTCTTGGTTATGCACCTAAGGATGCACAGCGGGGTGAAGCCCTACAAGTGTGACGAGTGCGATAAACGTTTTTCACGAAATGACAAtctcaaaaaacatttgaagAAAGTCCACGGCAAGTCTATGAAATATAAATGTCAAGTTTGCGACAagaaattcaaaatgaaacgtAAATTAGATAATCATATCGAAGTTCGCCATAATGTGCCCACTCAAAAGCCTTAA
- Protein Sequence
- MEKKLLIEADGLKMDMCRFCLSKDAQLAHVYSASKTLGCTIAEAAMECTTVEISLNDGMPLYVCKNCYRKLQDVHQFKKMVLKSDAVLRTYIRQLRFKKSTISRNYPAKDEPLGFDETQCTDQSRDDEIMTEDKEIDRGSDIVEGQREIGNEKSQTENVIGNDQIIIRVHDAIDNINASFEKQAFSVTPKGEKLSADNFSSRSNLTSNSPEESLEKRDNLPSNDSIEQIISTNSANHSLEMQIDEPLAITDITHRNLLDSKSNVQEISGNALIDHNSDSAVEMEERNDFDDWYSVEGWKNDTSEVESDNDGNTDLNRKKICTTSDKTKNKLRKSVLTNNANTNLQCEICEKRFARKDGLRRHLKNIHRLNKPEISNILGKKTSSKENDDSNSKSTEKLTSTSSTDQSLETQSEVSLEKTNHEDISDANKREDQENSGNSMTDHISENVEMEATNSSIEDDLDDRHSDEEGSEEDNSENESYENKRIDFKCEICKKSYATKNNLRRHNLEKHGSNLTKDEFKCEKCEKNYVRKESLRIHMTTVHESNKNEKEVDYSCNTCNEKFEERREFYIHEVRHFDKNYQPGKPIQCNVCGKLFKKLYKLKEHIRRHDDDDRPFQCTKCDKKFKTKHELASHQRFHGDTKLCPVCPICGKAVKYNLSQHIRRHSKNKNFMCQKCGKKFETMYHLKRHTEIHDGKMMECKICNKSFKGKTLLNAHNINCHHGKEFKCNICLNIYSSKQTLSIHNKTVHDKKRTFDCSECKKIFSSPMGLMLHKKSAHSRAKPFECQECGKGFSRKDFLVMHLRMHSGVKPYKCDECDKRFSRNDNLKKHLKKVHGKSMKYKCQVCDKKFKMKRKLDNHIEVRHNVPTQKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -