Xxan017084.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754473.1:1734995-1740377[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 5.7e-06 0.00012 22.9 2.4 1 23 271 293 271 293 0.99
2 12 8.1e-06 0.00017 22.4 0.7 1 23 299 321 299 321 0.99
3 12 1.3e-06 2.7e-05 24.9 1.3 1 23 327 349 327 349 0.99
4 12 0.21 4.4 8.5 0.5 1 13 355 367 355 369 0.90
5 12 1.4e-05 0.00028 21.7 0.7 1 23 676 698 676 698 0.99
6 12 6.3e-05 0.0013 19.6 0.3 1 23 704 726 704 726 0.99
7 12 7.5e-06 0.00015 22.5 3.7 1 23 732 754 732 754 0.99
8 12 7.8e-05 0.0016 19.3 4.6 1 23 760 782 760 782 0.99
9 12 8.8e-06 0.00018 22.3 2.7 2 23 789 810 788 810 0.98
10 12 0.00062 0.013 16.5 0.1 1 23 816 838 816 838 0.99
11 12 3.4e-05 0.0007 20.4 4.1 1 23 844 866 844 866 0.98
12 12 0.0063 0.13 13.3 3.8 1 23 872 894 872 894 0.98

Sequence Information

Coding Sequence
ATGGATGAAACGTCGATAACAAGCTACGCCCTAGCcacaatgtgtcgattgtgcttgTCGAGAGGAGACGTTACAATGTTCGATTTGTTCTCGGTTTCTCCGAGATTTAAAAATCGAGTAGCCGATGTAATTATGAAGTATGCTCCCGTTCAGATATTGAGACGGGATGAGATGCCAAAATTCATTTGTCGATCATGTCACACCCAACTCGAGAAATTTCACCAGTTCCAGATGCAAATAATACAGTCTGACAAAACACTACGACGCTACTTAAAACAATTACATGCTTTTAACAAAAAACCCAAGACTCGCAGCCCTTCTAATGATTCTTTGGTTGGTGATAATAGTGCAGACACACGTGAGAAGTGTGAAAATAtgcctttaaaattaaaaataaaagaagaacCAGTGGATTATAACTCGATAAATGCACCAGACTGTGTCAACAGTACAGTACGAACTTTATCGAAGGGTGATGAGGACTCAGATGTCAATATTGAGGTCAGTAAATGGGTAGAAGACGTGGATGTCAACTCGAAATTGGAAGTGTCTGTTAATTTGGACTGCAAAATAAACCAGGAAATGTCTTTAAATTACGACATAAAAGACCTACCAACGGACGATAAATCATCAATTTTGACAGAATCAGTTAATGATTTATCTAACGACAGTGAAATCGACTATGAAGACACAATAGGTCAAACATCGGGAAATTCCGCGTGTGTTCGTTCTACAGCTGTGGATGTGAATTCTGAGAGATGTGAAACGAAAAATACTTCGTTGAAACGTagacatactggagagaaacaaTATCAGTGCGATGtatgtaataagtgtttcattaAGCCGAACAATTTAAAAGTTCACAAacgaatacatactggtgagaaaccatatcagtgcgatgtttgtaataagtatttcGTTAGGTCGGGCGACTTGAAACTTCATACGCGAATTCACTCGGGTGAgagaccgtatcagtgtgacgtttgtaataagagtttcattCAGTCGAGCAAATTAAAAgttcacaaacgtatacatactggtgagaaaccgtatcagtgtgaagtTTGCAACAAGTATTTCACTCAGGCAGAAACATCGATAAATAGTTACGCTCTTGCaacaatgtgtcgattgtgcttatcaaGAGGAGACGTTACGATGTTCGATGTGTTTTCATTTTTGCCTAGATTTAAAGTTCAAGTCGCCGATGTAATTATGAAATGTGCTCCCGTTCAGATATTGAGACGCGATGAGATGCCAAAATTTATATGTCGATTATGTTACAGTCAACTGGAGAAAAGTTACCAGTTCCAAATGCAGGCAATACAGTCTGATAAAACAATACGACGCTACTTAGAGCAATTAAATACTTTTGACAAAAAACCTAAGCTTGAGTATTCCATGCAGAGCCCTTCCAAGGTTCCTTTCATTGATAATATTAATGCAAAGATTGCTAGGACGTGTGAATCTTTAGAATTTAATGACGTGTTTGACTCGAATGTTGACTGCGCAGAGCAAGAATATGAACACTTCAATTCAGCAATTAAACTTAGTGAtgaaatgtcattaaaatcagtAATAAAAGACGAACAAATAGATGATTATTCATTAATTGCGGATGACACACTAGAAACTTTATCGAAAGGAGGTGACGCCATTCGTAATATTGACGACAGTACCCTGGCAAAAGAAGCCAACTGGAATTTGGAAGGATCGACTAATTTCCTATCGGCTTGCGAAACAAACGTGGAAAAGTCTTTAAAATGCGTGATCAAAGACGAACCGATTGATGGCAGCTCATTAATTATAGCAGAATCAATTGTGGACACAATAAATTCTTCGTCTAATGATGGTGGCAATGAAATCAGCTGCGAAGACACAAAAATTGGCATTGGCCACACTTTGGAAAGCTGCGCGTCAATTCATTCGACCCATACAGATGTAGATGAGAATTTTGGGAGTTGTGAATATAAAGATACTTCTCAAAAACATaagcatactggtgagaaaccatatcagtgtgatgtttgtaataagGGTTTCATTCAGttgagcaaattaaaaattcacaagcgtatacatactggtgagagaccGTATCGATGTGACGTTTGCAATCAGTCTTTTATTGAACTGGGCAATTTGAAAGTTCACAAACGGATACATacgggtgagaaaccatatcagtgtgatatttgtgATAAGTGTTTCAATCAATCGAACAAATTAAAAGTTCACAAGCGtattcatactggtgagaggccatatcagtgtgatgtTTGCAATAAGTGTTTCATTGAGTCGACCCACTTAAAAgtacacaaacgtatacatactggtgagaaaccaaaTCAATGTGATGtatgtaataagtgtttcattcGGTCGAGTGATTTAAAAGTTCATAAACGTATACATAGTGGTGAgagaccttatcagtgtgacgtttgtctTAAGAGTTTGATCAGCTCAAGTGCGTTAGAAGTTCATAAACGAATACATACtgatgagaaaccatatcaatgtaatgtttgtaaaaagtgtttcgcaCAATTAtcgtatttaaatactcacaaacgtTGGCATACTGGAGAAAAACCGTATacatgtgacgtttgtaataaatgtttcgttCTGTTACGTACCTTTAATAGACACAAATCTGTACATATAgccgaaaaaacaaaattttaa
Protein Sequence
MDETSITSYALATMCRLCLSRGDVTMFDLFSVSPRFKNRVADVIMKYAPVQILRRDEMPKFICRSCHTQLEKFHQFQMQIIQSDKTLRRYLKQLHAFNKKPKTRSPSNDSLVGDNSADTREKCENMPLKLKIKEEPVDYNSINAPDCVNSTVRTLSKGDEDSDVNIEVSKWVEDVDVNSKLEVSVNLDCKINQEMSLNYDIKDLPTDDKSSILTESVNDLSNDSEIDYEDTIGQTSGNSACVRSTAVDVNSERCETKNTSLKRRHTGEKQYQCDVCNKCFIKPNNLKVHKRIHTGEKPYQCDVCNKYFVRSGDLKLHTRIHSGERPYQCDVCNKSFIQSSKLKVHKRIHTGEKPYQCEVCNKYFTQAETSINSYALATMCRLCLSRGDVTMFDVFSFLPRFKVQVADVIMKCAPVQILRRDEMPKFICRLCYSQLEKSYQFQMQAIQSDKTIRRYLEQLNTFDKKPKLEYSMQSPSKVPFIDNINAKIARTCESLEFNDVFDSNVDCAEQEYEHFNSAIKLSDEMSLKSVIKDEQIDDYSLIADDTLETLSKGGDAIRNIDDSTLAKEANWNLEGSTNFLSACETNVEKSLKCVIKDEPIDGSSLIIAESIVDTINSSSNDGGNEISCEDTKIGIGHTLESCASIHSTHTDVDENFGSCEYKDTSQKHKHTGEKPYQCDVCNKGFIQLSKLKIHKRIHTGERPYRCDVCNQSFIELGNLKVHKRIHTGEKPYQCDICDKCFNQSNKLKVHKRIHTGERPYQCDVCNKCFIESTHLKVHKRIHTGEKPNQCDVCNKCFIRSSDLKVHKRIHSGERPYQCDVCLKSLISSSALEVHKRIHTDEKPYQCNVCKKCFAQLSYLNTHKRWHTGEKPYTCDVCNKCFVLLRTFNRHKSVHIAEKTKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-