Xxan022727.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754475.1:18759738-18769928[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.7 35 5.6 4.6 2 19 479 496 477 499 0.89 2 15 0.048 0.99 10.5 3.5 1 21 506 526 506 527 0.93 3 15 0.00024 0.005 17.7 1.7 1 23 534 556 534 556 0.97 4 15 5.7 1.2e+02 4.0 0.8 1 12 562 573 562 576 0.88 5 15 1.1 24 6.2 4.5 2 19 861 878 859 881 0.89 6 15 0.0048 0.099 13.7 3.1 1 21 888 908 888 909 0.94 7 15 4.4e-05 0.00091 20.1 2.2 1 23 916 938 916 938 0.97 8 15 8.1e-05 0.0017 19.2 2.8 1 23 944 966 944 966 0.99 9 15 0.19 4 8.6 4.5 3 19 1309 1327 1307 1330 0.86 10 15 0.98 20 6.4 1.3 1 13 1337 1349 1337 1351 0.89 11 15 0.011 0.22 12.6 2.2 1 23 1362 1384 1362 1384 0.98 12 15 0.00021 0.0043 17.9 2.7 1 23 1390 1412 1390 1412 0.99 13 15 2.5e-06 5e-05 24.0 2.0 1 23 1418 1440 1418 1440 0.99 14 15 2e-05 0.00041 21.2 1.6 2 23 1447 1468 1446 1468 0.96 15 15 0.00052 0.011 16.7 2.5 1 23 1487 1509 1487 1509 0.98
Sequence Information
- Coding Sequence
- ATGACGTCTACAAATTATAATTCTGAAAGCAAAATTAGCGaagaaacgattttaaaatgtgaaataaaaGACGAACCAATGGATGAAATTTCGTTAATTCCAACCGAATATGCTGACGATACTTCGTCTAAAGGTGATGAAGAAACAAAATTAGATATTCgtgatataaaatttattaaaaaccacaACTGTATAGAGAAAGAATCTGCAAGGTTCAACTCAGCGAACAAAATAATTAAcgaagaaatcaaaatcaaggaTGAACCAGCGGATGATGATTTGCAATTTTTAGCAGAATCAGTACCAATAGCACCTTTTTACGATGGTCATAGTGAAAGCATGTGTAAAGATTCAAAAGTCGATATTGGTGACTTTAAATTGGATTTAGATGTGGATGTCAACCAGAAAGGAAAAGAACCAGAAAATTTCATTACAGCAGACAGCATTGccgaagaaatatttattaaatctgaaatcaaagaaGAATCGGTTGATGGCTCATCAAATCCCTATGTTAACAATGCAATCGAGTGTAAAGATCCAAAAATAGAGAATGGTGATGCAAAATTTACTGACGATATAAATTTTAACTGGAAAGAACAAGAAGCTGGAAGTTCTAActcagaaaacaaaattaacgaCGAAATAGAATTTGAAATCGAAGATGAATTGGTTGATGAAAACGaattaattttgatagaaattatTGATGACGCAATGGATGCATCATCTAACATTAATGAAATCAGCAAAGGCGAGGCAAATATTGAAATTGGTCGCACGTCGGATAGCTTCGTGGGTTTTAGTTCTTCTGATGTTACAAAAAAAGGGTACCGAAACACTTCGCTTTCGACAGAATCTGCACCAATATTGCCTATTTACGATAGTGATAGTGAATCCTATTGTGAAGATTCAAAAGTTGGTATTGGGGGCATTAAATCGGATATAAATAAAGACATCAGCCGGAAAGGGAAAGAAccagaaaattttattacagCAACCAATGTTATCGAggaagtatttattaaatcagAAATCATTGAAGAACCTGCTGATTTTAGTGTCTTTAATCCATTAGAATATAATAATGACACAAAATATACTTTATCTAGTACTCCAAAGATAGAAGATGCAGATCTTAACGATAGAGAGAAGGAACTTGGAAGTTCGAAGTCGATGTACAAAATTAACGAGAAAGAATTCGAAATCAAGAACGAATCAATGAAAAAGAACGCATTAATTCCAACAGATATTATTGATGACGCAGTGAATACTTCATCTAACATTGATGTTTGTGATATCAATCCAGAAGAGACGAAGATTGATCTTAGCCACATATCGGGGAACTTCGAGGATTTTCGTTTTACTGATGTGACAGAACATTTGAATAAACTTAAAGAGAAGCAGAAAGCAGTTAAAAGATTGATGTTTTGTCACTGTGTTTTTTGTGGGTTGAATTTTAACCAATTAGAAAACCTAATAAAACACAATTGCCAGGATTCTGGAGAGAAATTTTTCGAATGCGATGTTTGCAACAAGCGCTTTAACGACCCAAACTGCCTATACTCTCACAAATGTATACTTCCTGGTAAAAAACCACACCGGTGTGAAGTTTGTAACAGACGTTTTACTCAATCGAGCGATTTGGATATCCATAAGATGATACATAcgggtcaaaaatcatttcggTGTGAATTTTGCGAAAGAACTTTCAATAAATTGGaAAGTAAAATTAGCGAGGAAACGATTATAAAATGTGAAATGAAAGACGAACCAATGAATGAAAATTCGTTTCTTCCAACCGCATGTGCAGTCGAAACTTCGTCTAAAGGTGATGAAGACACAAAATTAACTATTCctgatataaaaattacaaacctCAACTGTATAAAGAAAGAATCAGCAAGCGTCAACACAGCGAGCAAAATAATTAACGAAGAAACGTTCTTTAATGTCAAAATCAAGGATGAACCATTGGATGATAATTTGCAGCTTTCGGCAGAATCTGCACCAATATTGCCTATTTACGATGATGATAGTGAAATCTACTGTGAAGATTCAAAAGTTGGTATTGGGGACATTAAATTGGATATAAATGAGGGTGTTAACCGGAAAGGGAAAGAGCCAAAACATTTTATTACGGCAACCAATGTTATCGAggaagtatttattaaatctgaAATCATTGAGAAACCTGCGGATTTTAGTTTATTAAATCCATTAGAATATAAtgatgacacaaaaaatacttTATCTAGTACTCCAAAGATAGAAGATGCAGATCTTAACGGGAGAGAGGAGGAACTTGGAAGTTCGAAGTCGATGTACAAAATTAACGAGAAAGAATTCGAAATCAAGAACGAATCAATGAAAAAGAACGTATTAATTCCAACAGACATTATTAATGGCGCAGTGAATACTACATCTAGCATTGATGTTTGTGATATCAACCCAGAAGAGACAAAGATTGATCTTAGCCACATATCGGGGAACTTCGAGGATTTTCGTTTTACTGATGTGACAGAACATTTGAATAAACATAAAGAGAAGCAGAAAACAGTTAAAAGATTGATGTTTTGTCACTGTGTTTTTTGTGGCATGAATTTTAACCAATTAGAAAACCTAATAAAACACAATTGCCAGGATTCTGGAGAGAAACTTTTCGAATGCGATGTTTGCAACAAGCGCTTTAGCGACCCAAACTGCCTAAATTCTCATAAATGTATACTTCCTGGTAAAAAACCACACCGGTGTGAAGTTTGTAACAGACGTTTTACTCAATCGAGCGATTTGAATATCCATAAGATGATACATACGGGTCAAAAACCATTTCGGTGTGAATTTTGCGAAAGAACTTTCAATAAATTGAGTCAGTTGAAAATTCACTTGCGTAAACATACTGaAAGCAAAATTAGCAAAGAAACGATTATAAAATGTGAAATAAAAGACGAACTGATGAATGAAAATTCGTTAATTCCAATTGAATGTGTTGTCGAACCTTCGTTTAAAGGTGACGAAGActcgaaatttattaaaaaccccAATTGTAAAGACAAAGAATCTGCACATATCAACTCAACGAGCAAAACAACTAAcgaagaaatctttaaaatcaaaatcaagGATGAACCAGCGGATGACAGTTTGCAATTTTCATCAGAACTTGCACCAATAGAGACACTTTCCGAGGTTAATAGGGATGGCAAAAATTCAAGAGTCAACCGGAGGGGAAAAGGgcctgaaaattttattacagcAAACAATGTTatccagaaaatatttttaaaatctgaaatcaaagaaGAACCAATGAATGATAGCATCATAATTCCGAAAGACTCGATTGATGTTATAGCAAGTACTTCATTTGACAGTGAAATCAGGTGTGATGATTCAAAGCCGGGTATTGACGAGATTAATTTGGATAAAGATAAGTGTCTTAACCGGAAAGGACTCGTAAGTTTTAATTCAGCAACCGAAGTTACCAaagacatttatttaaaatctgaaatcaaagaaGAACCCGCGGATTGTAGTTTATCAATTCCAGTAGAACATATTATCGAAGACACAAAAAATGCTTTATCTAGCGCACCAAAGACCGAAGACGCAGATCTTAACAGGAAGGAGAAGGAAATTGGGAATTCGAACTCGACGAAGAAACTTAGCGACAAAGAatttgaaatcaaagacgaaTCAACGAATAAGAGcgtgttatttttaattgaaattgtagacgaaacaaCGAATGCTACGCCTAAAATTAACCAAGATGAGTCAAAGATTGATGTTGACCACACATCGGGAAGTTTCGTGGGTTTCCGTTCTTCTGATGCAATcgaatattttgataaacatgAAGAAAAAGACAGGAATGTCTCAGCCAATCTTGAGAACCAGAAAAAAACGGAAAAGTGGTTGCGTTGCCACTGTGTTTTTTGTGACATGGTTTTTAACCGATTAGAAAACTTAAGAAAACACAATTGCCAACGTTCTAGAGAGAAACTTTTTGAATGCGATACTTGTAACAAGCAATTTACTCAATCAAATACCCACAAATGTGTATATCCTGAAAAAAAAGCATATCGGTGTGAAGTTTGTAATGGACGCTTTACAAAATTGTGTAATTTAAATGTTCATAAaatgatacatactggtgagaaaccatatcagtgtaaAGTTTGTAAGAAGAAATTTGTTACTTTTGGCaaattgaaaattcacaaacgtatacatactggtgaaaaaccgtattcatgtgacgtttgtagtaaGAGTTTCACGACTTCGaccaatttaaatattcataaacgtacacatacAGGCGAGAAACCATGTCGGTGTGATGTTTGTGGTAGGAGTTTCACCCAATTGAGTTCATTAAACGCTCATAAAGCAACACATACCGATAGGATACTTTATCAGTATCAAAGGTATCGAAGGCTTAGTGAGGAACCGTACCGATGTGACGTTTGTagcaaatgttttattaaattgggCAATCTGAATATCCATAAGCTTAAACATCGTTGA
- Protein Sequence
- MTSTNYNSESKISEETILKCEIKDEPMDEISLIPTEYADDTSSKGDEETKLDIRDIKFIKNHNCIEKESARFNSANKIINEEIKIKDEPADDDLQFLAESVPIAPFYDGHSESMCKDSKVDIGDFKLDLDVDVNQKGKEPENFITADSIAEEIFIKSEIKEESVDGSSNPYVNNAIECKDPKIENGDAKFTDDINFNWKEQEAGSSNSENKINDEIEFEIEDELVDENELILIEIIDDAMDASSNINEISKGEANIEIGRTSDSFVGFSSSDVTKKGYRNTSLSTESAPILPIYDSDSESYCEDSKVGIGGIKSDINKDISRKGKEPENFITATNVIEEVFIKSEIIEEPADFSVFNPLEYNNDTKYTLSSTPKIEDADLNDREKELGSSKSMYKINEKEFEIKNESMKKNALIPTDIIDDAVNTSSNIDVCDINPEETKIDLSHISGNFEDFRFTDVTEHLNKLKEKQKAVKRLMFCHCVFCGLNFNQLENLIKHNCQDSGEKFFECDVCNKRFNDPNCLYSHKCILPGKKPHRCEVCNRRFTQSSDLDIHKMIHTGQKSFRCEFCERTFNKLESKISEETIIKCEMKDEPMNENSFLPTACAVETSSKGDEDTKLTIPDIKITNLNCIKKESASVNTASKIINEETFFNVKIKDEPLDDNLQLSAESAPILPIYDDDSEIYCEDSKVGIGDIKLDINEGVNRKGKEPKHFITATNVIEEVFIKSEIIEKPADFSLLNPLEYNDDTKNTLSSTPKIEDADLNGREEELGSSKSMYKINEKEFEIKNESMKKNVLIPTDIINGAVNTTSSIDVCDINPEETKIDLSHISGNFEDFRFTDVTEHLNKHKEKQKTVKRLMFCHCVFCGMNFNQLENLIKHNCQDSGEKLFECDVCNKRFSDPNCLNSHKCILPGKKPHRCEVCNRRFTQSSDLNIHKMIHTGQKPFRCEFCERTFNKLSQLKIHLRKHTESKISKETIIKCEIKDELMNENSLIPIECVVEPSFKGDEDSKFIKNPNCKDKESAHINSTSKTTNEEIFKIKIKDEPADDSLQFSSELAPIETLSEVNRDGKNSRVNRRGKGPENFITANNVIQKIFLKSEIKEEPMNDSIIIPKDSIDVIASTSFDSEIRCDDSKPGIDEINLDKDKCLNRKGLVSFNSATEVTKDIYLKSEIKEEPADCSLSIPVEHIIEDTKNALSSAPKTEDADLNRKEKEIGNSNSTKKLSDKEFEIKDESTNKSVLFLIEIVDETTNATPKINQDESKIDVDHTSGSFVGFRSSDAIEYFDKHEEKDRNVSANLENQKKTEKWLRCHCVFCDMVFNRLENLRKHNCQRSREKLFECDTCNKQFTQSNTHKCVYPEKKAYRCEVCNGRFTKLCNLNVHKMIHTGEKPYQCKVCKKKFVTFGKLKIHKRIHTGEKPYSCDVCSKSFTTSTNLNIHKRTHTGEKPCRCDVCGRSFTQLSSLNAHKATHTDRILYQYQRYRRLSEEPYRCDVCSKCFIKLGNLNIHKLKHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -