Basic Information

Insect: Xanthostigma xanthostigma
Gene Symbol: -
Assembly: GCA_963575645.1
Location: OY754465.1:56808483-56818485[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.021 0.42 11.7 0.4 1 23 179 201 179 201 0.96

2 13 3.7 76 4.6 3.9 1 23 222 244 222 244 0.89

3 13 0.00079 0.016 16.1 2.4 1 23 250 272 250 272 0.98

4 13 2.7e-06 5.6e-05 23.9 0.3 1 23 291 314 291 314 0.97

5 13 0.06 1.2 10.2 1.3 3 23 327 347 325 347 0.95

6 13 2.4e-05 0.00048 20.9 2.3 2 23 354 375 353 375 0.96

7 13 7.4e-06 0.00015 22.5 0.3 1 23 381 403 381 403 0.99

8 13 5e-07 1e-05 26.2 1.2 1 23 409 431 409 431 0.99

9 13 3.9e-06 8e-05 23.4 0.6 1 23 437 459 437 459 0.99

10 13 7e-05 0.0014 19.4 0.6 1 23 465 487 465 487 0.97

11 13 5.7e-05 0.0012 19.7 3.2 1 23 493 515 493 515 0.98

12 13 1.1e-06 2.2e-05 25.2 0.2 1 23 521 543 521 543 0.98

13 13 5.8e-05 0.0012 19.7 1.4 1 23 549 571 549 571 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.021	0.42	11.7	0.4	1	23	179	201	179	201	0.96
2	13	3.7	76	4.6	3.9	1	23	222	244	222	244	0.89
3	13	0.00079	0.016	16.1	2.4	1	23	250	272	250	272	0.98
4	13	2.7e-06	5.6e-05	23.9	0.3	1	23	291	314	291	314	0.97
5	13	0.06	1.2	10.2	1.3	3	23	327	347	325	347	0.95
6	13	2.4e-05	0.00048	20.9	2.3	2	23	354	375	353	375	0.96
7	13	7.4e-06	0.00015	22.5	0.3	1	23	381	403	381	403	0.99
8	13	5e-07	1e-05	26.2	1.2	1	23	409	431	409	431	0.99
9	13	3.9e-06	8e-05	23.4	0.6	1	23	437	459	437	459	0.99
10	13	7e-05	0.0014	19.4	0.6	1	23	465	487	465	487	0.97
11	13	5.7e-05	0.0012	19.7	3.2	1	23	493	515	493	515	0.98
12	13	1.1e-06	2.2e-05	25.2	0.2	1	23	521	543	521	543	0.98
13	13	5.8e-05	0.0012	19.7	1.4	1	23	549	571	549	571	0.99

Sequence Information

Coding Sequence: atgagtGTAAGTCAAAATAATTCACAAGACGCAAGTTCTTATGCTGTGCCAGTTTTAAGATTAGATAAAGTATGTCGGACCTGTTTAATCGAGAAAAAAGAAATGCGCTCGTTGTTTGATGCCTGCGTCGCTGATATGCTGATGTCCTGTACTTCAATCGCGGTCAATTCTGGAGATGGTTTAccagaaaaaatatgttcacaGTGTACACTACAGGTCAgcaaatcatatacttttaaacagttatgtaaaaaatctgaCGTAACCTTAAGAAATTATATAACTCAACAACATACTATCGATGAACTTATGTTTACGGTTAAATCTGAACCGTTAACGGATCTAACGAACAATGAAATATCTGAAGCGATCGAATATCCTATCAAAGTTGAAACACTTATCACCTTAGAGAACTcagaaaacataaaaacattaGATAATTCggaatcaaaaataaataacaacgaTGATACAGTAGAATCATTAACGACCGatgaatatattaataataccgATTCGAAAGAATTGGAGATATTCAATTGTGATACCTGCAAAGAAAGTTTCGAGTTGCGCGTCGATTTAGAAGTTCACAAACTTCAACATGTAAAACAAGACGATGGTTTTACAACTGCTTCAGCCGCGGCCAATAAAGAAACGGCTGTGTTTACGtgcaaaatttgtcaaaaacagtttttagCCCGATGGTTATACAATAAACATTCCAAACATCACACGACAAACAAACCGTACACGTGTGAATCGTGCGGAAAAGATTTCTTATATGCATCTCATCTGCAGCGACACACGCAGTCACATTTGACGGACCGTTTTACTCAACGTAACGGAATCTCTAGCGAATCGAATAAGCCGTACTCGTGCCCGATTTGTCCGAAGGATTTTGTTGAATCAAAAAGTCTTAAGCGGCATATGCAAATACAGCATTCCTCGTTCAATTATGTCTCTGAAAAGAAACACTTATGCACAGTGTGTGGAAAAAGGTTTTTAGAAGGCCGCTATCTAGTCATTCATATGagaaaacatacaggagagaaaacGCTGTCTTGTGAAATTTGCGGGAAAACTTTTTCTGTGCCGCACTGCTTACGAAGTCACATGACGATTCACAGCGGCCTCAAACCGTATAAATGTAATGTGTGTGGCAAAGCCTTTGCATGGTCATCCGTACTGACGCAACACATGAGGACACATACTGGGGAGAAACCCTACGTGTGTACGGTTTGTGGTAAACGCGTATCGCAACACTCTAACCTATTAATTCATATGCGTACCCATTCGGGAGACCGACCCTACAAATGTTCCGTGTGTGATAAAGCTTTTGCAGGTTCGAGCCAGTTAACCCTTCACAAACGGAGTCATacgggtgagaaaccgtacGCTTGCTCGATATGCGATAAAAAATTCGCACAACACAACGAGCTTGTCGTACACACACGAGGACACACAGGCGAACGACCGTACCATTGCACTACGTGTCCGAAGGCTTTTGTGACCGGTGGACACCTCAAAAGTCATCTTCGGACACATACCGGTGAAAAACCTTATCCGTGCACAATTTGCACAAAAAGATTTGCGGATTCTAGCGTTCTTAAGGCCCACATGAGGATTCATACCGGAGAGAAACCATATGTTTGCGCAATATGCGGATATCGGTTTGCGCATTCGGCATCTCTCTACACTCATAAGAAAACTCATGCACAAGAATCAAAGCATTCTAGCGGCGGAAAAAGaggtttattttataattgcgAAAGTATACAAACAACCAGTGAGCCGTCATTACAATAA
Protein Sequence: MSVSQNNSQDASSYAVPVLRLDKVCRTCLIEKKEMRSLFDACVADMLMSCTSIAVNSGDGLPEKICSQCTLQVSKSYTFKQLCKKSDVTLRNYITQQHTIDELMFTVKSEPLTDLTNNEISEAIEYPIKVETLITLENSENIKTLDNSESKINNNDDTVESLTTDEYINNTDSKELEIFNCDTCKESFELRVDLEVHKLQHVKQDDGFTTASAAANKETAVFTCKICQKQFLARWLYNKHSKHHTTNKPYTCESCGKDFLYASHLQRHTQSHLTDRFTQRNGISSESNKPYSCPICPKDFVESKSLKRHMQIQHSSFNYVSEKKHLCTVCGKRFLEGRYLVIHMRKHTGEKTLSCEICGKTFSVPHCLRSHMTIHSGLKPYKCNVCGKAFAWSSVLTQHMRTHTGEKPYVCTVCGKRVSQHSNLLIHMRTHSGDRPYKCSVCDKAFAGSSQLTLHKRSHTGEKPYACSICDKKFAQHNELVVHTRGHTGERPYHCTTCPKAFVTGGHLKSHLRTHTGEKPYPCTICTKRFADSSVLKAHMRIHTGEKPYVCAICGYRFAHSASLYTHKKTHAQESKHSSGGKRGLFYNCESIQTTSEPSLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01511130;
90% Identity: iTF_01511130;
80% Identity: -