Xxan022635.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754475.1:17487613-17493909[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.00087 0.018 16.0 2.0 1 23 168 190 168 190 0.97
2 13 0.00026 0.0054 17.6 2.6 1 23 427 449 427 449 0.98
3 13 0.00087 0.018 16.0 4.5 1 23 455 477 455 477 0.97
4 13 2.8e-05 0.00057 20.7 1.3 1 23 483 506 483 506 0.97
5 13 0.0043 0.089 13.8 0.5 1 23 512 534 512 534 0.98
6 13 1.9e-06 3.9e-05 24.4 2.2 1 23 540 562 540 562 0.99
7 13 6.6e-06 0.00014 22.7 0.9 1 23 568 590 568 590 0.98
8 13 2.4e-05 0.0005 20.9 1.0 1 23 596 618 596 618 0.98
9 13 0.00012 0.0025 18.7 6.5 1 23 624 646 624 646 0.97
10 13 3.2e-07 6.6e-06 26.8 2.8 1 23 652 674 652 674 0.99
11 13 0.00011 0.0023 18.8 2.8 1 23 680 702 680 702 0.98
12 13 6.9e-05 0.0014 19.5 0.8 1 23 708 730 708 730 0.98
13 13 0.0032 0.065 14.2 5.8 1 23 736 758 736 758 0.99

Sequence Information

Coding Sequence
ATGGTATGGGAAGAAAATTTGTCTGTAAATTTTAATCCAGAAAACAAAATGgataatgaaacatttttaaaaacggaaATTAAAGACGAATCGATAGACGATAATTCATTGTTACCAGCCACTTATGCTGATGATAGTGAAATCAGCTGTGGAGATACCAAAATCGATATTAGTGACACTAAAGTAGGTTTAAAAGTGGAAGAAAACTGGAATGAAATAAATTCTGTCACTATTAATTCAACAAACGAAAATAACGAACAAATATCCTTAAAGTCCGAAATCAAAAATGAACCGATCGATAATTTTTTACCAGAATGCGTTGATGACACGGTAAACGCCTCATCAAACGGTGGCAGCAGTGAAATCAACATTAAAACATCAGGAAACATAGTGAAtcttcattctgctcagaaaACTGAACATTTTGAGAAATATGAAGAGATGGACAAAAGTAGTCACTCAGCAAATTCTGAGAAACATGAAGAATCAACGAAAAAAAAGTATCCGTGTGATGTTTGTGACAAAAGTTTCAAACTAAAGCATAAGTTAGATACGCATAAGctcgtacatactgCTGATTATGCTGACGATGGAAAATTTAGCTGTGAAGATTCAAAAATCGATAATAGTGACACTAAAaaattaatCTTTTCTGACGAACAAACCACGCTTGAGTGTTTCCATCAGTGGCCCTCTGAGGATCCTTTCATTAACATTAATGCAGATATCACCGTGAAGTGTGAATCATTAAAAATTGAGAATGTGTTTGACATGAATGTTACTTGGGAAGAAAATTTGTCTGTAAATTTTAATCCAGAAAACAAAATGgataatgaaacatttttaaaaacggaaATTAAAGACGAACCGATAGACGATAATTCATTGTTACCAGCCACTTATGCTGATGATAGTGAAATCAGCTGTGGAGATACCAAAATCGATATTAGTGACACTAAAGTAGGTTTAAAAGTGGAAGAAAACTGGAATGAAGCAAACTCTGCCACTATTAATTCAACAAACGAAAATAACGAACAAATACCCTTAAAGTTCGAAATCAAAAATGAACCGATCGATAAATTTTTACCAGAATGTTTTGATGTCACGGTAAACGCCTCATCAAACGGTGGCGGCAGTGAAATCAACATCAAAACATTAGGAAACATAGTGAAtcttcattctgctcagaaaACTGAACATTTTGAGAAATATGAAGAGATGGACAAAAGTAGTCACTCAATAAATTCTGAGAAACATGaagaatcaacaaaaaaaaagtatccgTGTGATGTTTGTGACAAAAGTTTCAAACTAAAGCATAAGTTAGATACGCATAAgcgcgtacatactggtgagaaaccacatcagtgtgacgtttgtaagaagtgcttttctcaaataaatactTTAATTAGACACAAACTCGTTCATACTGAtgaaaaaccgtatcagtgtgacgtttgtaagaaGAGCTATAAGCAAGtgtctgctttaaaaaaacacaatcgcagcatacatacaggtgagaaaccttatcagtgcgacgtttgtaaaaagCGCTTTGGTGAATTATTACAGTTAACCGAGCATAATCGAgtgcatactggtgaaaaaccatatcaatgtgacgtttgtaacaagtgtTTTGCTAGATCAGTTAGTTTAAAGGTACACTATCGAAtccatactggtgaaaaaccatatcagtgtgacgtttgtaagaaGAGCTTTAGACGTGCATCTGCTATACAAAGACACAAtcgcgtacatactggtgaaaaaccatatcagtgtgacgtttgtaaaaagtccTTTATTTTATCATCAGAGTTAAAGAAACACAGTCAAGTTCATACTGATGAgaagccgtatcagtgtgatgtatgtaaaaagtgcttttcTAGATCAAGTTATTTACAGACTCACAGTCACGTGCATACTGGTCAGAAAGCTTACCAATGTGACGTTTGCGACAAAAGCTATACTCACCCGTCATATTTAAAGAGACACACTCGTGTGcatacaggtgagaaaccgtatcagtgtgatgtATGTAACAAGTGCTTTACTATATCAGGATATTTACGGACTCATAGTCGCATACACAATGTAGAGAAAACGTACCAGTGTGATGTTTGTAACAAAGGCTTTAACAAATCAACAGATTTAGATAGACACTCTCGtattcatactggtgagaaaccgtatcagtgtgacgtgtgTAAAAAGTGCTTTTGTCTGGCAAAGACGTTGGATAAACACTTGTCAACACACTGCTGA
Protein Sequence
MVWEENLSVNFNPENKMDNETFLKTEIKDESIDDNSLLPATYADDSEISCGDTKIDISDTKVGLKVEENWNEINSVTINSTNENNEQISLKSEIKNEPIDNFLPECVDDTVNASSNGGSSEINIKTSGNIVNLHSAQKTEHFEKYEEMDKSSHSANSEKHEESTKKKYPCDVCDKSFKLKHKLDTHKLVHTADYADDGKFSCEDSKIDNSDTKKLIFSDEQTTLECFHQWPSEDPFININADITVKCESLKIENVFDMNVTWEENLSVNFNPENKMDNETFLKTEIKDEPIDDNSLLPATYADDSEISCGDTKIDISDTKVGLKVEENWNEANSATINSTNENNEQIPLKFEIKNEPIDKFLPECFDVTVNASSNGGGSEINIKTLGNIVNLHSAQKTEHFEKYEEMDKSSHSINSEKHEESTKKKYPCDVCDKSFKLKHKLDTHKRVHTGEKPHQCDVCKKCFSQINTLIRHKLVHTDEKPYQCDVCKKSYKQVSALKKHNRSIHTGEKPYQCDVCKKRFGELLQLTEHNRVHTGEKPYQCDVCNKCFARSVSLKVHYRIHTGEKPYQCDVCKKSFRRASAIQRHNRVHTGEKPYQCDVCKKSFILSSELKKHSQVHTDEKPYQCDVCKKCFSRSSYLQTHSHVHTGQKAYQCDVCDKSYTHPSYLKRHTRVHTGEKPYQCDVCNKCFTISGYLRTHSRIHNVEKTYQCDVCNKGFNKSTDLDRHSRIHTGEKPYQCDVCKKCFCLAKTLDKHLSTHC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-