Basic Information

Insect: Xanthostigma xanthostigma
Gene Symbol: -
Assembly: GCA_963575645.1
Location: OY754473.1:21461875-21463609[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00035 0.0072 17.2 0.5 1 23 188 211 188 211 0.94

2 13 0.00042 0.0086 17.0 4.0 1 23 217 239 217 239 0.99

3 13 3.5e-05 0.00072 20.4 2.9 1 23 250 272 250 272 0.97

4 13 1.6e-06 3.2e-05 24.7 1.0 1 23 278 300 278 300 0.99

5 13 1.8e-05 0.00036 21.3 2.3 1 23 306 328 306 328 0.99

6 13 0.004 0.082 13.9 3.7 1 23 334 356 334 356 0.98

7 13 5.8e-06 0.00012 22.8 4.7 1 23 362 384 362 384 0.98

8 13 2.3e-05 0.00047 21.0 0.3 1 23 390 412 390 412 0.98

9 13 0.00012 0.0024 18.7 3.2 1 23 418 440 418 440 0.99

10 13 0.00026 0.0054 17.6 3.1 1 23 446 468 446 468 0.99

11 13 0.00047 0.0097 16.8 1.4 1 23 474 496 474 496 0.98

12 13 0.0002 0.0041 18.0 9.4 1 23 502 524 502 524 0.98

13 13 1.3e-06 2.6e-05 24.9 1.5 1 23 530 552 530 552 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00035	0.0072	17.2	0.5	1	23	188	211	188	211	0.94
2	13	0.00042	0.0086	17.0	4.0	1	23	217	239	217	239	0.99
3	13	3.5e-05	0.00072	20.4	2.9	1	23	250	272	250	272	0.97
4	13	1.6e-06	3.2e-05	24.7	1.0	1	23	278	300	278	300	0.99
5	13	1.8e-05	0.00036	21.3	2.3	1	23	306	328	306	328	0.99
6	13	0.004	0.082	13.9	3.7	1	23	334	356	334	356	0.98
7	13	5.8e-06	0.00012	22.8	4.7	1	23	362	384	362	384	0.98
8	13	2.3e-05	0.00047	21.0	0.3	1	23	390	412	390	412	0.98
9	13	0.00012	0.0024	18.7	3.2	1	23	418	440	418	440	0.99
10	13	0.00026	0.0054	17.6	3.1	1	23	446	468	446	468	0.99
11	13	0.00047	0.0097	16.8	1.4	1	23	474	496	474	496	0.98
12	13	0.0002	0.0041	18.0	9.4	1	23	502	524	502	524	0.98
13	13	1.3e-06	2.6e-05	24.9	1.5	1	23	530	552	530	552	0.99

Sequence Information

Coding Sequence: AtggagaaaacaataaaaatgtttgctgAAGAATCACGCGGTTTGTGTAGAGTATGTTTAGTCGGCGATAGCGTAGTACTTACAGATATATTCGAATTTTCAACAAAGTTAGGAACAATAATCGCCGATGCATTGACTTTATGCGCTCCCGTACATGTGACGCAAAGTGATGGCCTTCCGTCACTCATATGCCAACAGTGCTTCACAAAATTGGAAACGGTGCATCACTTTCGAATACTTGCCGTGAAGTCGGAAaaagttttgcaaaaatgtttacaacagtTTCGAGTTCCAGACAGTAAATCGTTCGGGTGTTTTGAAAACGCAATAAAGGTGGAAGAATATAGAAACCAACACGAGATAAAACATTGTGTTGAAAGAAGAACTTTAATAAACAACGCAGAAAATAGTAACATTTCTAATTCAACAGATGAACTAAAAGACGATTTTTATACAGCAGAAAATTTTGATGGTGAGCAAATTAAAATAGAAGTAGACATTAACGAAATGAAAGCCGACTCTTTCAGTGATGGCTCTTGCGATGCCGGAGACGAAAAAAAACATACGTGTTCCGTTTGCGAACAATCGTTCCCACAGCAAGATGATTTGAAATATCATGTGTTGCTGATACATAATAACGAGAAGAAATTCAAATGTACGGCGTGcacaaaacaattttcaaacatcaaCCAGCTGAAAAAACACAGACGGAAACATATGAAcgccaaattttcaaaaaaatcaatttacgaATGCCCCGAATGTAAAAAAACGTTTCGAAAAGCGTCGAGCCTCAATTTACACAACTGCTCGCACTTCAACGGGAAACCGTACGAATGCAATACGTGCAACAAATCGTTCATACAGTCGGGTGATCTGAAAATACACAAACGTATGCATACAGGAGAACGGCCGTATCAGTGCGACGTATGCAAAAGGCGTTACATCCGTTCGGCTTCGTTGAACCGACACAAACGCAAACACacgggagagaaaccgtacaagTGCGACATTTGCCAAAAATGTTTCGGCGAAGCGGGTACTCTCAGCATGCACAAACACACGCACACGGGGGTGAAACTGCATCAGTGCGACGTGTGCGGCAAATGTTTCGTTCACTCGGGCGCGCTGAATCGACACAAACGCATCCACACGGGGGAGAGACCCTACGCGTGCGATCGATGCAGCAAAGCGTTCGCCCAGTCGGGCGAACTGACCGTGCACAAAAGGACACACACGGGGGAGAAGCCCTATCGGTGTGACGTGTGCAACAAATGCTTCATCGACTCGTCCATACTCAACACGCACAAACGTACGCACACGGGAGAGAAGCCGTACAAGTGCGACGCTTGCGCTAAGTGTTTCAATAGGTCCGATTTATTGAACGTCCACAAACGAAAACATACCGGAGAGAGACCGTACCACTGTGAAATCTGCAATGAATCGTTTGTCGAGTCAAGAGTCTTGAATAGGCATAAACGTATTCATACAGGCGAGAAACCGTTCTGTTGCGatgtttgtaagaagtgttttaatCGATCCGACCATTTGAATATACATAAACGAACACATTCTGGAGAGAAACCCTACCAGTGTGATATTTGTGATAAAAGATTTGTTTATTCGAATTACTTGAATGTCCATCGACGGACacacaataatgaaaaatag
Protein Sequence: MEKTIKMFAEESRGLCRVCLVGDSVVLTDIFEFSTKLGTIIADALTLCAPVHVTQSDGLPSLICQQCFTKLETVHHFRILAVKSEKVLQKCLQQFRVPDSKSFGCFENAIKVEEYRNQHEIKHCVERRTLINNAENSNISNSTDELKDDFYTAENFDGEQIKIEVDINEMKADSFSDGSCDAGDEKKHTCSVCEQSFPQQDDLKYHVLLIHNNEKKFKCTACTKQFSNINQLKKHRRKHMNAKFSKKSIYECPECKKTFRKASSLNLHNCSHFNGKPYECNTCNKSFIQSGDLKIHKRMHTGERPYQCDVCKRRYIRSASLNRHKRKHTGEKPYKCDICQKCFGEAGTLSMHKHTHTGVKLHQCDVCGKCFVHSGALNRHKRIHTGERPYACDRCSKAFAQSGELTVHKRTHTGEKPYRCDVCNKCFIDSSILNTHKRTHTGEKPYKCDACAKCFNRSDLLNVHKRKHTGERPYHCEICNESFVESRVLNRHKRIHTGEKPFCCDVCKKCFNRSDHLNIHKRTHSGEKPYQCDICDKRFVYSNYLNVHRRTHNNEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01511095;
90% Identity: -
80% Identity: -