Xxan009519.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754468.1:19582722-19584396[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00045 0.0092 16.9 1.1 3 23 180 201 178 201 0.94 2 12 4.6e-05 0.00095 20.0 0.6 2 23 209 230 208 230 0.97 3 12 1.7e-07 3.6e-06 27.6 1.4 1 23 236 258 236 258 0.98 4 12 1.1e-05 0.00023 22.0 1.8 1 23 264 286 264 286 0.98 5 12 1.3e-05 0.00027 21.7 3.8 1 23 292 314 292 314 0.98 6 12 0.03 0.63 11.1 2.0 1 23 340 362 340 362 0.97 7 12 2.5e-05 0.00052 20.8 0.3 1 23 367 389 367 389 0.95 8 12 0.00017 0.0035 18.2 0.6 1 23 395 417 395 417 0.97 9 12 5.5e-06 0.00011 22.9 3.7 1 23 423 445 423 445 0.98 10 12 6e-05 0.0012 19.7 10.1 1 23 451 473 451 473 0.97 11 12 7.6e-07 1.6e-05 25.6 0.3 1 23 479 501 479 501 0.99 12 12 0.00011 0.0022 18.9 1.5 1 23 507 529 507 529 0.97
Sequence Information
- Coding Sequence
- ATGCCTGAATCAATAGAAGATATTTCTCATTTAAATTATGATCGGATATGCAGAGCATGCTTAACTCAAGCatctaatttaaaatcattattttctgAAACCAAAAGTAATTCAACGCGTCTTGTAGAAATGTTAATGGCGTGTGCCTCCGTACAGattgcACAGAATGATGGCTTACCAGCACAAATATGTGTTAAATGCTGTGATCAAATTAAACAAGCTTATAcattccgacaacaatgtgaGAAAACTGATGCTATTTTACACTACAATAACTGTAAACAAGAAGTATTAGATaacatagaaataaaaaatgagaaTGATTACGATTCAGATACCGACACAAAATACTTAGTAAAGGCAGAAGTTACAAATGAGTCATCAGATCAAGAAAATGCAGATGACAACGATGATAACGATTTAAGATCGGATACCGAAAAGAGAAAAAGCAaacgaaaacaaaaacgaattcaAAAGAAATTTTTGAGGAAGCGTGCATTACGTTCAGGACGTAAAAGAGAATCAAACGAAATAAATTGCAGAAAATGCGATGAAATCTTCTCAAAAAAGAACGAATTAAGGGAACACATGAAGGAAAAACATCCGCGTCATCCGGGAAATCAAACGTGTAATGTATGTTCGAAGCCATTTTCTAATATTTGGAAATTAGAAACACATATGCGTAGTCACACTCAAGAAAAACCGTTCACATGTGATATATGTGGACAGATGTTTAGTACTAGATTCAATCTCCAGCGACACATGATGCAGCATACCGGTGAACGACCACACAAGTGTCATCTGTGCGATAAAGCTTTTATACAAGCCGTAACATTAACCGAACACTTACGCGTTCATACAGGAGAAACTCCTTTCCACTGCGATCTGTGCGGTAAGTCATTTACTAAGTCGAGACAGTTAAGACTGCATATTCAAAAACACAACGAACCAAAATTAGAGGACCGACCACTGACACAAAGGAAAAAAAGGACCGTTGCTACGCCCGAAGAAAGAAAACACGTCTGCCATATTTGCGAAAGGCGTTATTTATCCCAGCTagcattaaaaatacatttaagaaTACACACCGATAAAAAATTTCTCTGCAGCGAATGCGGCAAAGGATTCGTTAGCCGTTCAAATTTACTAATCCACTCGAAAGTCCATACGGGTGAAAAACCATTCCGCTGTTCTGTGTGCGGTAATTGTTACACGCAGGTCGGTTCATTAAAGGCACACATGGTAATACATTCGGGTATAAAGCCGTATCAGTGCACTGTCTGCAATAAATCGTTCACGCATTCAGTTTCGTTAAAGAAACATAAACTGAttcatactggagagaaacctcATCACTGCACGTTGTGCGATAAGACATTTACGCAGAGAACGCATTTGAAATATCATATGAGGACACATTCGGGGGAGAAACCTTACGTTTGTAGCTATTGCGGTAAGGGCTTTGCTCTGAAAGGCAACATGACTGTGCATATGAGGACTCACACGGGAGAAACGCCCTACATGTGTCCGGCGTGCGGCAAAGGATTTTATGATTCAAGTAGTATGAAGAAACATCATAAAGGACACAGTGAAAAAACTaacgaacaaaaaatttaa
- Protein Sequence
- MPESIEDISHLNYDRICRACLTQASNLKSLFSETKSNSTRLVEMLMACASVQIAQNDGLPAQICVKCCDQIKQAYTFRQQCEKTDAILHYNNCKQEVLDNIEIKNENDYDSDTDTKYLVKAEVTNESSDQENADDNDDNDLRSDTEKRKSKRKQKRIQKKFLRKRALRSGRKRESNEINCRKCDEIFSKKNELREHMKEKHPRHPGNQTCNVCSKPFSNIWKLETHMRSHTQEKPFTCDICGQMFSTRFNLQRHMMQHTGERPHKCHLCDKAFIQAVTLTEHLRVHTGETPFHCDLCGKSFTKSRQLRLHIQKHNEPKLEDRPLTQRKKRTVATPEERKHVCHICERRYLSQLALKIHLRIHTDKKFLCSECGKGFVSRSNLLIHSKVHTGEKPFRCSVCGNCYTQVGSLKAHMVIHSGIKPYQCTVCNKSFTHSVSLKKHKLIHTGEKPHHCTLCDKTFTQRTHLKYHMRTHSGEKPYVCSYCGKGFALKGNMTVHMRTHTGETPYMCPACGKGFYDSSSMKKHHKGHSEKTNEQKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01511107;
- 90% Identity
- iTF_01511107;
- 80% Identity
- -