Xxan022920.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754475.1:20380371-20384004[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00052 0.011 16.7 0.7 2 23 312 334 311 334 0.95
2 16 8 1.6e+02 3.5 0.3 7 21 509 523 509 524 0.89
3 16 0.00021 0.0043 17.9 1.1 2 23 637 659 636 659 0.96
4 16 5e-06 0.0001 23.1 1.2 1 23 664 687 664 687 0.98
5 16 0.00029 0.0059 17.5 6.6 1 23 781 804 781 804 0.94
6 16 3.4e-06 7e-05 23.6 3.1 1 23 813 836 813 836 0.97
7 16 5.6e-06 0.00011 22.9 0.9 2 23 882 903 881 903 0.97
8 16 5.2e-07 1.1e-05 26.1 3.5 1 23 910 932 910 932 0.99
9 16 2.8 58 4.9 0.6 3 17 941 953 939 959 0.74
10 16 0.00055 0.011 16.6 3.8 1 23 965 987 965 987 0.97
11 16 0.00052 0.011 16.7 4.4 2 23 993 1015 992 1016 0.95
12 16 0.0014 0.029 15.4 1.2 1 23 1020 1043 1020 1043 0.96
13 16 0.00026 0.0054 17.6 0.4 1 23 1049 1072 1049 1072 0.96
14 16 4.2e-06 8.6e-05 23.3 3.0 1 23 1078 1100 1078 1100 0.98
15 16 1.6e-07 3.2e-06 27.8 1.4 1 23 1106 1129 1106 1129 0.98
16 16 0.00049 0.01 16.8 1.7 1 23 1135 1158 1135 1158 0.97

Sequence Information

Coding Sequence
ATGGAAAAGAAACTACTAATTGAAGCAGATGGGTTAAAAATGGATATGTGTCGATTCTGTTTAAGTAAGGATGCACAATTAGCACACGTTTATAGCGCTTCAAAAACACTTGGATGCACAATAGCAGAAGCTGCAATGGAGTGTACCACTGTTGAGATATCTTTGAACGATGGCATGCCACTGTACGTCTGCAAAACTTGCTATCTTAAACTCCAAGACGTTCACCAGttcaaaaaaatggttttaaagTCCGACGCCGTGTTAAAAACTTACATCAGACAGCtgcgttttaaaaaaagcacaataAGTAGAAACTATCCTGCTAAAGACGAGCCTCTGGGCTTCGACGAAACGCAATGTACAGACCAAAGTAGAGACGATGATATAATGACTGAAGACAAGGAAATTGATCGAGGCAGCGACAACATTAATACATCTTTTGAAAAACAAGCCTTTATTATAACCCCAAAAGACGAAAATTTGTCTGCAGATAATTTCAGTTCACGAAGTAATTTAACATCGAATTCACCGGAAGAATCTTTAGAGAAACGAGACAACTTACCAAGTAATGATTCTATTGAACAGATAATTTCCACCAATTCAGCTAATCACAGTTTGGAAATGCAAATCGATGAACCTTtagcaattacagatattacaCACCGCAATCTATTGGACAGTAAATCTAATGTTCAGGAAATTAGTGGAAATGCTTTGAGTGATCATAATTCAGACAGTGCTGTGGAAATGGAGGAAAGGAATGATTTTGACGACTGGTATTCAGTAGAAGGGTCGAAGAATCATAATTCTGAACTGGAATCGGACAATGATGGAAACACTGATTTAAACCgtaaaaaaatttgtacaaCATCCGATAagaccaaaaataaattacgcaAATCAGTTTTGACAAATAATGCAAACGCGAATTTGCAGTGTGAAATATGCCGAAACAGATTTGCTCGAAAAGATGGTTTGCGAAggcatttgaaaaatattcatcgcttaaacaaacaagaaataTCAAACATATTAGGAAAAAAGACCTCCTCGAAGGAAAATGATGACTCGATGAACAGTAAGTCGACTGAAAAGTTAACTTCGACCAGTTCAACTGACCAGAGTTTGGAAACACAAAGCGAAGTGTCTTTAGAAAAAACAAATCATGAAGATATATCGGACGCTAATAAACGCAAGGATCAAGAAAACAGTGGAAATTCTATGACAGACCATATTTCAGAAAATGTAGAAATGGAAGCAACAAACTCTTCGATAGAAGATGATTTTGACGACCGGCAATCAGATGAAGTGGGATCAAAAGAAGATAATTCTGAAAACGAATCCAATGATCACGAAACAAGTAGGAATAGTTCGGATAATTCTTCAGTATCGGACCATACCGATGACTGGGTGTTAGAAGAAGATTCCACTTCTGAAACAGAAGAAGATTTCGGTTCTTCTGACGATTCCGCTGAGAATAAAttgaagaataataaaaaaaacaatttaaaacgtAAAATATCTGATGAAACCTTTTCTAGAAAACGTGTTTTACGTAGACATACAAAGCGTACACCAAACGAACAAGAATCATCggatacttttaataaaatcaattctTCAAAGGAAAATGAGAACTTATTGATTAGTAATGCAGTTGAAAAACTAATTTCCGCCAATTTGGACGTGCAAACCAATGAACCTTTAGAGAATTCGAATATCGCAGATCTTGacatattaaatactaataaACGCAGCGATCAAGAAAAATCTCGATATTCTTCGAACGATAACACTTTGGACAATGCTGTAGAAAGGGATGATGTTGACGCTCTACATTCAGAAGAAGTGGGGTCGAAAGACGATAATTCTGAAAAGGAAAGTGAGAAAAATATAAACCCatctttaaaatgtaaaatatgtcaGAAATTTTTTAGTTGGAAAGGTAATTTACGTAGACATATTTTGAGAGTGCATAATAAGATGCATTTTAAGTGTCAAATGTGCGAGAAAAGCTTTGCTCGCAAAGATGGTTTGAATagacatgtaaaaaaaattcatggctCAGCTGAGCAATCTATAAACGAAAATAAATCAACGTCAAACAAACAAGAAACGTCaagtaaattagaaaaaatgaaCTCCTCGAAGAAAAATCATGACTCAGTAAACAATAAATCGGTTGGCCAGAGTTTGAACATGCAAGGTAAAGAGTCTTTAGAAAAAACAGATCAGGAAAATATATCGGACGTTAACAAACGCAAGGATGATTTTGACAACTGGCGTTCAGAAGAAGTGGGGTCGAAAGAAGATAGTTCTTACGAGAATAAAAGAATTAAATTCAAATGTGAAATATGTAAACTATCATTTACTCACAAAAGTAATTTTCGAAGACATCATTTGGAAAAACATGAAAGCAATTTGACAAGACATGAATTTAAGTGTGAAAAATGCGAAAAAAATTTTGCTCGAAAAGATCATTTACGTAAACATATGGCAAGAATCCatgaatcaaataaaaatgaGAATGAAATCCGCATATATAGCTGCAATACTTGTAatgaaaaatttctaaaatatcgCGAATATCACAGCCATGAAGTCAGACACTTCGATAAGACTTACGAACCGGGCAATCCTGTTCGGTGCAATGTATGCGGGAAGTCATTTGATACActatctaaattaaaattgcatATCAAGAGACATGACGACGACGATAGGCCTTTTCAATGCACTAAATGTGATAAAAAATTCAAGACTAAATACAATTTAGCAAGTCACCAACGGGTCCACGGCGATACTAAATTATGGTCCATATGTCCCATTTGTGGAAAAGCTGTGAAATCTAACATAAGTCAACATATACGATGTCATTCAAACAGCAAAAATTTCATGTGTCAGAAATGTGGCAAAAAGTTCAAAACTTTGTTCTTCTTAAAACGGCATAAAGAAATTCACGATGGAGAAATGATGGAATGTAAAATTTGCAACAAAAGTTTTAAagggaaaacattattaaatgcaCATATTAAAAATTGTCACCACGGAAAAGAATTTAAATgtaacatttgttttaaaatttccagTTCGAAGCAAACTTTAAAAAGTCACATTAAAGGAGTTCACGAAAAGAAACGTGCCTTTGATTGTTCtgaatgtaaaaaaacattttcttctcCAGTGGGTTTAATGTTGCATAAGAAATCAGCCCATAGCAGAACGAAACCTTTTGAATGTCAAGAGTGCGGTAAATGTTTTACTCGCAAGGATTTCTTGGTTATGCACCTAAGGATGCACAGCGGGGAGAAGCCCTACAAGTGTGACGAGTGCGATAAACGTTTTTCACGAAATGACAATCTCAAAATACATTTGAAGAAAGTCCATGGCAAGTCTATGAAATACAAATGTCAAGTTTGCGACAAGAAATTCAGAATGAAACGTAAATTAGATAATCATATCGAAGTTCGCCATAATGTGCCCACTCAAAAGCCTTAA
Protein Sequence
MEKKLLIEADGLKMDMCRFCLSKDAQLAHVYSASKTLGCTIAEAAMECTTVEISLNDGMPLYVCKTCYLKLQDVHQFKKMVLKSDAVLKTYIRQLRFKKSTISRNYPAKDEPLGFDETQCTDQSRDDDIMTEDKEIDRGSDNINTSFEKQAFIITPKDENLSADNFSSRSNLTSNSPEESLEKRDNLPSNDSIEQIISTNSANHSLEMQIDEPLAITDITHRNLLDSKSNVQEISGNALSDHNSDSAVEMEERNDFDDWYSVEGSKNHNSELESDNDGNTDLNRKKICTTSDKTKNKLRKSVLTNNANANLQCEICRNRFARKDGLRRHLKNIHRLNKQEISNILGKKTSSKENDDSMNSKSTEKLTSTSSTDQSLETQSEVSLEKTNHEDISDANKRKDQENSGNSMTDHISENVEMEATNSSIEDDFDDRQSDEVGSKEDNSENESNDHETSRNSSDNSSVSDHTDDWVLEEDSTSETEEDFGSSDDSAENKLKNNKKNNLKRKISDETFSRKRVLRRHTKRTPNEQESSDTFNKINSSKENENLLISNAVEKLISANLDVQTNEPLENSNIADLDILNTNKRSDQEKSRYSSNDNTLDNAVERDDVDALHSEEVGSKDDNSEKESEKNINPSLKCKICQKFFSWKGNLRRHILRVHNKMHFKCQMCEKSFARKDGLNRHVKKIHGSAEQSINENKSTSNKQETSSKLEKMNSSKKNHDSVNNKSVGQSLNMQGKESLEKTDQENISDVNKRKDDFDNWRSEEVGSKEDSSYENKRIKFKCEICKLSFTHKSNFRRHHLEKHESNLTRHEFKCEKCEKNFARKDHLRKHMARIHESNKNENEIRIYSCNTCNEKFLKYREYHSHEVRHFDKTYEPGNPVRCNVCGKSFDTLSKLKLHIKRHDDDDRPFQCTKCDKKFKTKYNLASHQRVHGDTKLWSICPICGKAVKSNISQHIRCHSNSKNFMCQKCGKKFKTLFFLKRHKEIHDGEMMECKICNKSFKGKTLLNAHIKNCHHGKEFKCNICFKISSSKQTLKSHIKGVHEKKRAFDCSECKKTFSSPVGLMLHKKSAHSRTKPFECQECGKCFTRKDFLVMHLRMHSGEKPYKCDECDKRFSRNDNLKIHLKKVHGKSMKYKCQVCDKKFRMKRKLDNHIEVRHNVPTQKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-