Xxan014936.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754471.1:41738140-41741570[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00071 0.015 16.3 0.2 1 21 160 180 160 181 0.95
2 16 0.029 0.59 11.2 1.2 2 23 227 248 226 248 0.97
3 16 0.0026 0.053 14.5 0.5 1 23 254 277 254 277 0.97
4 16 0.0037 0.076 14.0 3.2 1 23 289 311 289 311 0.95
5 16 0.47 9.6 7.4 0.7 5 22 313 330 312 330 0.94
6 16 0.029 0.6 11.2 1.5 2 23 432 453 431 453 0.96
7 16 0.00014 0.003 18.5 0.2 1 23 459 482 459 482 0.98
8 16 0.00013 0.0026 18.6 4.1 1 23 486 508 486 508 0.99
9 16 0.00091 0.019 15.9 4.7 1 23 514 536 514 536 0.95
10 16 0.00013 0.0026 18.6 2.0 1 23 542 564 542 564 0.96
11 16 1.4e-05 0.00029 21.6 0.0 1 23 570 592 570 592 0.96
12 16 9.1e-05 0.0019 19.1 0.1 1 20 598 617 598 620 0.92
13 16 1.2e-06 2.5e-05 25.0 0.7 1 23 626 648 626 648 0.98
14 16 5.3e-05 0.0011 19.8 1.6 1 23 654 676 654 676 0.96
15 16 3.9e-06 7.9e-05 23.4 1.0 1 23 682 704 682 704 0.98
16 16 0.014 0.3 12.2 4.6 1 23 710 732 710 732 0.98

Sequence Information

Coding Sequence
ATGCAGCTTACAGAAATATTATGGGAATGTGCCTCTATTCagATTACATCTGATGATGATTTACCCAAACTGATATGTGAAAAGTGTGTCGACCAATTGAAAATCAGCTATGAGTTCAAACTTATGTGTCATAATACTGAAAAAGAGTTACTAAAACTGATAGGAAAAGAAGaagcaaataatataaaaaatgagctAGCtattaaagaagaaattatttcaatagaaacggttaatataaaaaacgAACGGATCGATGCTTTATCTGTTGACGAAAAATTTGCCAATAATTCTAATAATAATGGTGATTGGCAAATTAATAGTGAAATTAAAcctgaacaaaaacaaatagTCACTATAAAAACAAACCAAAATCATAAGACATCAAAACGGTTTAAAAAGGGTACCGAATGCAATAAATATGCAAAAGTTATTAACATGAAGAATGATATTCAAACACATTCGTGTGAAGAAACGTATCCGTGCCAAGTCTGTTCAGAATCATTTACCGCCAAATCTGATTTAACTGAACATTTAAAAAAGCAACTCGAAAGTAATGATAACCTCGACGACAAGAGTTCAAATAATAATCAAGAAAAAGAGGAAAAAACTGAAGGTATTCATCCCGACTTAGAAAATGTTAGAAATATACCgaaggaacaatttaaaataggtgtaaaatgcaataaatgtcCCAGGACATTATTCAGCAAATCTAAAATGGAAACACATGTTATTCGTCATATAGgaataaaaaagttttcgtgTTCGCTGTGTTCGAGGTCGTTTGCAGTTTTGTCTGATTTAACGGGCCACAAAAAAAGGGTACATGctacaaataaagaaaaatcaacAATGAATTCATTTCAATGTAAAATGTGCTCAAAGACGTTTTCGCGAAAAAACACATACGATTTACACGTCACGCAACATCAATTTTGTTCGAAAATGCTTATTACACAATGTGATTTAAAAAGACATTTGAGAACGAACGGAGATTTGTCGGGTTTCCAATCTAAACACTCTATTAGAAATTTTGATACGAGCGTCAAATTAGACGAACGTAATACGGTCGAACTCGCCAGTCAATGTAGTGAGACATCTTCTGAATTTTTTGCACTGAACGGTACGGAACTGAATAGTGCACCTGAAAATTCTGCCAGTGAGCTTGGCGGACgcgatatttcaaaattaagcgatttaataaaatctgaGTCTATCGAAAATGAAGCCGTTCCAACAGACTTTGAGTATCTCAAAAACgttacaaaaatacaatttaaaaagggTGTGAAGTGTAACCAATGTCCTAGAATTCTCCACAGAAGATCAGACATGGAAAAACACATTAGTCAACACTtaaaaataaagacattttcGTGTGACATTTGTAGTGAATCGTTTGTAGTTATGTCCGACTTAGCCAGACACAGAAAAACTGTACATCCAGATAAGTTTAAGTGCAAAGTGTGTCTGAAGGAATTCACGACGATACACTATTTGAAAAGACACTTGCGGATACACGGGGAGTTAACGGGTTATCATTGCAAACATTGCTCCAAGAGTTTTGGTACCAGCGATGAGTTAAAGACTCACGCCGTTAAGCACGAAAACGATACTCCACACATTTGCCAAGAATGCGGGAAACAGTTTTCGAAAAAGGAAAGATTGACACTCCACATGTCTGTCCACACAGGCAAAAAGCCTTATTTATGTACAGTCTGCGGACGAGCTTTTGCTCTCTCAGGTAATTTAATAGTCCATATGAGAATACACAGCGGAGAAAAACCGTATGCATGCAAAGTGTGCGGCAAAACGTTTGCGCAGTGGGGATCTCTACGAGGCCATTTGCCTTCTCATTCGGACGAAAAGCAGTTTGTGTGCCAGACTTGTGGCAAGGCGTATAGTCGAAACAAGGCGCTGAAAGCTCATCTGAGACGCCACGCTGGCGTACGAGATTTTCCTTGTACGAAGTGTGACAAACGGTTTTATAGCAGTGACGGGCTCACAAGACATTTTGTTACGCATACAGGAGAGAAGAATttcaaatgtgaattttgcgaCAAAGCATTCAACCGATCAAGTACGCTGCGCGTTCACGCTAAAATACATAGCGGCGAACGACCGTTCATCTGTACAGTGTGTGAACGAAGTTTTCTACAAAAACATTGTCTTGTTAGTCATATGAATACACATAAATAA
Protein Sequence
MQLTEILWECASIQITSDDDLPKLICEKCVDQLKISYEFKLMCHNTEKELLKLIGKEEANNIKNELAIKEEIISIETVNIKNERIDALSVDEKFANNSNNNGDWQINSEIKPEQKQIVTIKTNQNHKTSKRFKKGTECNKYAKVINMKNDIQTHSCEETYPCQVCSESFTAKSDLTEHLKKQLESNDNLDDKSSNNNQEKEEKTEGIHPDLENVRNIPKEQFKIGVKCNKCPRTLFSKSKMETHVIRHIGIKKFSCSLCSRSFAVLSDLTGHKKRVHATNKEKSTMNSFQCKMCSKTFSRKNTYDLHVTQHQFCSKMLITQCDLKRHLRTNGDLSGFQSKHSIRNFDTSVKLDERNTVELASQCSETSSEFFALNGTELNSAPENSASELGGRDISKLSDLIKSESIENEAVPTDFEYLKNVTKIQFKKGVKCNQCPRILHRRSDMEKHISQHLKIKTFSCDICSESFVVMSDLARHRKTVHPDKFKCKVCLKEFTTIHYLKRHLRIHGELTGYHCKHCSKSFGTSDELKTHAVKHENDTPHICQECGKQFSKKERLTLHMSVHTGKKPYLCTVCGRAFALSGNLIVHMRIHSGEKPYACKVCGKTFAQWGSLRGHLPSHSDEKQFVCQTCGKAYSRNKALKAHLRRHAGVRDFPCTKCDKRFYSSDGLTRHFVTHTGEKNFKCEFCDKAFNRSSTLRVHAKIHSGERPFICTVCERSFLQKHCLVSHMNTHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-