Xxan022873.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754475.1:19866646-19868792[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.001 0.021 15.8 5.6 1 23 244 266 244 266 0.98
2 13 9e-07 1.8e-05 25.4 2.4 1 23 272 294 272 294 0.99
3 13 5e-07 1e-05 26.2 1.8 1 23 300 322 300 322 0.99
4 13 2.9e-05 0.0006 20.6 2.7 1 23 328 350 328 350 0.99
5 13 2.3e-06 4.7e-05 24.1 4.4 1 23 356 378 356 378 0.99
6 13 0.00031 0.0064 17.4 7.4 1 23 384 406 384 406 0.99
7 13 1.2e-06 2.5e-05 25.0 5.5 1 23 440 462 440 462 0.99
8 13 0.00049 0.01 16.8 1.8 1 23 468 490 468 490 0.99
9 13 7.3e-06 0.00015 22.5 2.7 1 23 496 518 496 518 0.99
10 13 9.8e-05 0.002 19.0 0.7 1 23 524 546 524 546 0.99
11 13 3.2e-06 6.6e-05 23.6 3.3 1 23 552 574 552 574 0.99
12 13 0.00019 0.0038 18.1 1.8 1 23 580 602 580 602 0.99
13 13 2e-05 0.0004 21.2 1.7 1 23 608 630 608 630 0.98

Sequence Information

Coding Sequence
atggaaaaaatattcGTAAATGGCTTCGACTTAAgtacaatgtgtcgattgtgcttaaCAAGAGGCGTTGCagtgttaaatatatttgaatgCTCAACCGAGTATAGGGAACAATTAGCCGATGCAATTATGAAGTGTGCTCCGGTTCAGATAACGAGATGCGATGAGATGCCGAATTTCATCTGCCAATCATGCAACACTCAACTGGAGAAAAGCCACCAGTTCCAAAAGCAAGTAGTGCAGTCTGACCAAACACTGCGACTCTATCTACAGCAACTACGAACTTCTAACAAACAAATTAAGGCTGAATGTTCCAACCAGAGGCCGTCTGAAGATTCTTTAATTCATAACACTAGTGCAGATATCAAGGTAAAACGTGAACCTTCAGCATTTCAAGACGTATCTGATATTAATGTCAACTTCAAAAAAGAGATGCCTTCTAATTTAACTTCTTCATACAAATTACACGaggaaatatctttaaaatcaGAAATTAAAGAAGAACCGACGGATGATACATCACCAATTTCAACTGAAAGTACTGATAACTTAGTAGACGCTTTCTCGGAGGTTGCCAACGGTATCGAAATCAAGTTAAATTACTCAGACTGCGAAGAACAATCGGATAACATTACGCATCTTCTTCCTGGTCGTTTAGGAGAACGTTTAGCAAACCATAGAGATAGCACCAAAAATCAAAgagaacttaaaaaaacaaaaaaagttacgTATAAATGCGACCtttgtaataaacattttacgTTTTTAAGCCAATTTAATACACACAAGCGTggacatactggtgagaagccgtatcagtgtgacgtttgcaacaagaGTTTCAGCCAATTGATTCATTTGACAACGCATCaacgcgtacatactggtgaaaaaccataccagtgtgacgtttgtaataagtttttcagttattcaaataatttgataaaacaccagcgtgtacatactggtgagaagccgtatcagtgtgacgtttgtaaaatgtgttttagaGAATCGGGTACTTTGAGAAATCATCAACGcgtgcatactggtgagaagccatatcagtgtgacgtttgtaataagtgtttcaggaAATTAGATACTTTGAGAAAACATCAGCGcgtgcatactggtgagaagccgtatcagtgtgacgtttgtcacAAGTGTTTTAGCTTTACACATGATTTGGTAACACACCAGCGCATACATGTCGGTGAGAATCCATATAGTTGTGACGTTTCTAATAAGTGTTTTAGTGAATCAGGTATATTGAGAACACACCAGGCCGAACATACtagtgagaaaccatatcagtgtgaagtTTGTAACAAGTGTTTCAGCCAATCGGTTCATTTGAAAACACACCAGCGCGTTCATACTGGTctgaagccatatcagtgtcaggtttgtaataagagtttcggtcgtttattcattttaaataatcacagacggacacatactggtgagaaaccatatcagtgtgacgtttgtaaaaagtgctttaGAGAATCAGGTAATTTGAAAAGTCATGAACGCGTGCACACTGGTAGAAAGCCATatcggtgtgacgtttgtaataagtggtTTAGTAAATCAGGTACTTTGAGAATTCAccaacgtatacatactggtgagaagccgtatcagtgtgacgtttgtaaaaagtgtttcagcgAATCCACTGCTTTGAGAAAACATCaacgcgtacatactggtgagaagccgtatCAGTGTGGAGCTTGTAATATGTGTTTCGGCGAGTCGAGTACTTTGAAAAGACATCAACGCGTACATACGGGTGAAAAACCGTATcattgtgacgtttgtaataaacaatTTGCTCAGTCAGGCGATTTAAATGCCCACAAGCGTAAACACTCGACAGTGGTTTAA
Protein Sequence
MEKIFVNGFDLSTMCRLCLTRGVAVLNIFECSTEYREQLADAIMKCAPVQITRCDEMPNFICQSCNTQLEKSHQFQKQVVQSDQTLRLYLQQLRTSNKQIKAECSNQRPSEDSLIHNTSADIKVKREPSAFQDVSDINVNFKKEMPSNLTSSYKLHEEISLKSEIKEEPTDDTSPISTESTDNLVDAFSEVANGIEIKLNYSDCEEQSDNITHLLPGRLGERLANHRDSTKNQRELKKTKKVTYKCDLCNKHFTFLSQFNTHKRGHTGEKPYQCDVCNKSFSQLIHLTTHQRVHTGEKPYQCDVCNKFFSYSNNLIKHQRVHTGEKPYQCDVCKMCFRESGTLRNHQRVHTGEKPYQCDVCNKCFRKLDTLRKHQRVHTGEKPYQCDVCHKCFSFTHDLVTHQRIHVGENPYSCDVSNKCFSESGILRTHQAEHTSEKPYQCEVCNKCFSQSVHLKTHQRVHTGLKPYQCQVCNKSFGRLFILNNHRRTHTGEKPYQCDVCKKCFRESGNLKSHERVHTGRKPYRCDVCNKWFSKSGTLRIHQRIHTGEKPYQCDVCKKCFSESTALRKHQRVHTGEKPYQCGACNMCFGESSTLKRHQRVHTGEKPYHCDVCNKQFAQSGDLNAHKRKHSTVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-