Xxan022476.3


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754475.1:16214319-16216567[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 7.5 1.5e+02 3.6 0.9 11 23 204 216 201 216 0.92
2 16 0.00016 0.0032 18.3 2.7 1 23 222 244 222 244 0.99
3 16 0.00025 0.0052 17.7 8.3 1 23 250 272 250 272 0.99
4 16 0.00071 0.015 16.3 3.4 1 23 278 300 278 300 0.96
5 16 0.00023 0.0048 17.8 5.0 1 23 306 328 306 328 0.99
6 16 2.7e-06 5.6e-05 23.9 2.4 1 23 334 356 334 356 0.98
7 16 2.7e-05 0.00056 20.7 8.0 1 23 362 384 362 384 0.99
8 16 9.8e-06 0.0002 22.1 3.7 1 23 390 412 390 412 0.99
9 16 2.7e-05 0.00056 20.7 2.5 1 23 418 440 418 440 0.99
10 16 5.1e-07 1.1e-05 26.2 3.0 1 23 446 468 446 468 0.99
11 16 2.8e-06 5.8e-05 23.8 5.8 1 23 474 496 474 496 0.98
12 16 0.0017 0.034 15.1 8.0 1 23 502 524 502 524 0.98
13 16 1.5e-05 0.00031 21.5 1.8 1 23 530 552 530 552 0.99
14 16 0.00035 0.0072 17.2 3.4 1 23 558 580 558 580 0.99
15 16 3.4e-05 0.00069 20.4 4.3 1 23 586 608 586 608 0.98
16 16 4.1e-05 0.00084 20.2 3.7 1 23 614 636 614 636 0.96

Sequence Information

Coding Sequence
atgaaaaaaatatcgatagttGGATTTGGCTTAAGTACAATGTGCCGATTGTGCTTATCGAGGGGCGTTGTACTGTCTGACGTATTTAGGATTTCATCCCAAATGAAGAATAGCGTGGCAGGTGTAATTATGAAATGTGCTGCTGTCCAGATAACTAGAGGCGACGGGATGCCGAATTTCATCTGTCAAACATGTTACACTCAACTGGAAAAAACGCACCAGTTTCTGATGCAAATAGAAAATTCTGACAAAACACTGCGACGCTATTTTCAGCAATTATTTCATTCTGACAAACCATTCAAAACTGAATGTTCTGTTCAACCTTCTGAAAATCATTTAATCCTTAACTGTAATAAAGATACAGTGAAATGTGAATCTTTAGAGCTCCATGATGAATTTGATATAGATCTTGATTGGAAAGAAAGCGAAgcttcaaattttattcaagaaagtaaaaataattatgaaatttctCTAAAATCCGAAGTTAAGGACGAACAGATGGATGACGGTTTATTAATTCTAACAGAATCAGTCGATGATACTGTAAACGCTTCATTAAACGCCAATGAAAATGAAATTAGCTGCGAAGATACGAAAATTAATATTAGCCACGCATCcgatttaaatactcacaaacgtatgcatactgatgagaaaccttaccagtgtgatctttgtaataagtgtttctttgACTTACCCGAATTAAATATACACAAACGTaggcatactggtgagaaaccttatcggtgtgatctttgtaataagtgtttctttcGGTCACATGATTTAATTAAACACAAACGTaagcatactggtgagaaaccttatctgTGTGACATTTGTAGTAAGTGTTTCTTTCAGTTACGCGATTTAAATAatcacaagcgtatacatactggtgagaagccttataagtgtgacctttgtaataagtgttttgcAGTGTCATGCAATTTAAATgaacacaagcgtatacatactcgtgagaaaccttatcagtgtgacatttgtaaaaagagtTTCTCTCAATCAAACACTTTGAAAAAACACAAgcttatacatactggtgaaaaaccttACCAGTGCAATCTTTGTGATAAATGTTTTTCTCAATCttgcagtttaaaaaaacacaagcgtgtgcatactggtgagaaaccttatcagtgtgatctttgtaataagtgtttctcacaGTCATACTATTTAATTGAGCACAAGCGcattcatactggtgagaaaccgtatcagtgtgaccaTTGTGATAAAGGTTTCTCTCTGTTAAGCAATTTCAATgaacacaaacgtatacatactggtgagaagccgtatcagtgtaacgtttgtaataagcgGTTTTCTACGGCATCCAATTTTACTCGGCATAAGCTTACACATACTGGTAAGAAACCTTATGAGTGTGACAtctgtaataaatgtttctctCAGTCATCCCATTTGAATACTCACAAACTTACACATAATAATGAGAAACCTTACAaatgtgacctttgtaataagtgtttttctCATTCGTTCAAATTGAATGAACATAAGCTTAAACATACCTgcgagaaaccttatcaatgtGACGTATGTAATAAAGGTTTCTCTCAGTTGATCCATTTAAAAgaacacaaacgtatacatactggtgagaaaccttatcagtgtgacgtttgtaataaactgTTCTCAAAGTCATTCAATTTTTCTCGGCACAAACTTACACATACTGGTAAAAAACCTTATGagtgtggcatttgtaataagtgtttttctCAGTTAGTccatttaaatactcacaaactcaCACATACTAAAGAGGAACCTTATAaatgtgacctttgtaataagtgtttctctcagtCATCCAAATTAAATGAACATAAACTTGCACACTGA
Protein Sequence
MKKISIVGFGLSTMCRLCLSRGVVLSDVFRISSQMKNSVAGVIMKCAAVQITRGDGMPNFICQTCYTQLEKTHQFLMQIENSDKTLRRYFQQLFHSDKPFKTECSVQPSENHLILNCNKDTVKCESLELHDEFDIDLDWKESEASNFIQESKNNYEISLKSEVKDEQMDDGLLILTESVDDTVNASLNANENEISCEDTKINISHASDLNTHKRMHTDEKPYQCDLCNKCFFDLPELNIHKRRHTGEKPYRCDLCNKCFFRSHDLIKHKRKHTGEKPYLCDICSKCFFQLRDLNNHKRIHTGEKPYKCDLCNKCFAVSCNLNEHKRIHTREKPYQCDICKKSFSQSNTLKKHKLIHTGEKPYQCNLCDKCFSQSCSLKKHKRVHTGEKPYQCDLCNKCFSQSYYLIEHKRIHTGEKPYQCDHCDKGFSLLSNFNEHKRIHTGEKPYQCNVCNKRFSTASNFTRHKLTHTGKKPYECDICNKCFSQSSHLNTHKLTHNNEKPYKCDLCNKCFSHSFKLNEHKLKHTCEKPYQCDVCNKGFSQLIHLKEHKRIHTGEKPYQCDVCNKLFSKSFNFSRHKLTHTGKKPYECGICNKCFSQLVHLNTHKLTHTKEEPYKCDLCNKCFSQSSKLNEHKLAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-