Xxan011036.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754469.1:9834027-9837276[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.6 33 5.7 0.4 3 23 11 32 10 32 0.93 2 16 6.4e-06 0.00013 22.7 0.6 3 23 39 59 37 59 0.97 3 16 0.0089 0.18 12.8 1.8 1 23 68 90 68 90 0.98 4 16 0.0077 0.16 13.0 0.4 1 23 97 119 97 119 0.98 5 16 1.9e-06 3.9e-05 24.4 2.1 2 23 126 147 125 147 0.97 6 16 2.2e-06 4.5e-05 24.2 0.7 1 23 153 175 153 175 0.98 7 16 9.3e-06 0.00019 22.2 2.5 1 23 280 302 280 302 0.98 8 16 0.00038 0.0079 17.1 1.0 1 23 308 331 308 331 0.97 9 16 0.014 0.3 12.2 3.0 1 23 339 361 339 361 0.97 10 16 0.012 0.24 12.4 0.9 3 23 369 390 367 390 0.96 11 16 4.1e-06 8.5e-05 23.3 0.4 3 23 397 417 395 417 0.97 12 16 0.00012 0.0024 18.7 0.5 1 23 426 448 426 448 0.98 13 16 0.00036 0.0074 17.2 0.6 1 23 454 476 454 476 0.97 14 16 9.1e-06 0.00019 22.2 3.4 2 23 483 504 482 504 0.97 15 16 4.7e-07 9.7e-06 26.3 1.3 1 23 510 532 510 532 0.98 16 16 0.0021 0.043 14.8 1.8 1 23 538 561 538 561 0.97
Sequence Information
- Coding Sequence
- ATGAGACATCTCAAACAGTTCACCGTATTTTGCGACGTGTGCTCGAAAggttacttttcaaaaaaggaaATTGAATATCACAAAAGCATAGCTCACGACGGAAGTAAAATCGATTGCGAGACTTGTAATAAATCGTTTCCGACCAAAGAAGCGCTTCGATCGCATCTAAAGACGCATCAGAACATCGCTGATCGGATAATCTATCCGTGCGGAACGTGCGACAAAACGTTTCTGTCAAGGTTCGGCTTACGTCATCACGAGAAAATTCATACTGGACAGCGGTTCAATTATATGTGCGAGGCGtgcggaaaaaaattaacgtcgAAAAAAGGTCTCGACGATCATTATAAAATTCATACCGGTTCGAAACCGCTCACGTGCGAAACTTGCGGGAAATGTTTTAGTAAAAAAGGAACTCTGGAACTTCACATGAGAATACATACCGGTGTTAAACCGTACGAGTGCAAAGAGTGCGGTAAACGATTCACGCAGCGCAGTCCGATGGTTATTCATATGAGAAACCATACGGGGGAAAGACCTTATCATTGTCATCTTTGCACTGACAAATTCACAGCACAGACATTCCCTTTGgagcaaaatttggtttgggGCTCAGAAGACAAGTCAATTTCGAATTTCTTATACGATTATTTTGTTGCTCAATCAAATCGAACCAAACTAAACCAAACCAAAGAAGAGAATGTTAACGAAACAGAAAATTCAATGGAAGAAAGTGAAATTCAAAAACAACCGCATTTAAAGCGCATGACACGTGCGAGAAATTCTAAACGCGCGGTCGGTATTAAAGAACCTAACGTTGACGACGGATCAAAACTGTTTAAATGTTCCGTTTGCTCAAAAGAATTCACGAGGAAACGATATCTGAAACGTCACGTTTTGATCCACAGCGGAGAGAAACCTTTCCAGTGCGACGCCTGTCCGGCGCGTTTTAATCAAAAAAGTAATCTCTTAACCCATAAAAAATCCCAACACAGTTCGTCGTCTTCGAAAAACTTCGCGTGCGAATCTTGTTCGCACAAATTTAAAACGAAGCAAGGTCTAAAACTACACGAGATGAcgcatttgaaaaaatattccttGTTTTGCGACGTTTGCTCGAAGGGTTTCTTCTTCAAGAACACGCTGGAAATTCACAAACGCAGCGTGCACAGTGAAAAAAGTATCGCTTGCGGAATATGTAACAAGTCGTTTTCTACGACGATCCTGTTGAATTCTCACATGAGAACGCATCAGAGCATTGCCGAACGAACTTTGTATCCCTGCGAGATGTGCGATAAGAAGTTTTTGTCCAAAACTGCGTTGCGAAATCACATTAAAGTGCATACGGGACAAAGTAATTTTGTATGCGAGACGTGTGGCAAAGAATTGACGTCGAAGCAGAGTTTGAACGATCATACCAAGCTGCATTTGGGATTGAAGCCGTTGACGTGCGAAACTTGCGGGAAGTGTTTCAGTAAGAGAACAACATTAAGAGTGCATATCCAAACCCATACGGGTGTCAAGCCGTATGAATGCAAAGAGTGCGGCAAACGATTTACACAAAGCTCTTCATTAGTGATCCACAAGAGGAATCATACGGGAGAGAGACCTTACAAGTGCCATCTTTGCGACAGCAAATTTGTCAGTAAACCTAACTTGGATTCTCATCTGGCCAAGACGCATAATGTTTTTGGTTCAACGATGCAGAAAAATCaacatttaagttttttaacgaCTTAA
- Protein Sequence
- MRHLKQFTVFCDVCSKGYFSKKEIEYHKSIAHDGSKIDCETCNKSFPTKEALRSHLKTHQNIADRIIYPCGTCDKTFLSRFGLRHHEKIHTGQRFNYMCEACGKKLTSKKGLDDHYKIHTGSKPLTCETCGKCFSKKGTLELHMRIHTGVKPYECKECGKRFTQRSPMVIHMRNHTGERPYHCHLCTDKFTAQTFPLEQNLVWGSEDKSISNFLYDYFVAQSNRTKLNQTKEENVNETENSMEESEIQKQPHLKRMTRARNSKRAVGIKEPNVDDGSKLFKCSVCSKEFTRKRYLKRHVLIHSGEKPFQCDACPARFNQKSNLLTHKKSQHSSSSSKNFACESCSHKFKTKQGLKLHEMTHLKKYSLFCDVCSKGFFFKNTLEIHKRSVHSEKSIACGICNKSFSTTILLNSHMRTHQSIAERTLYPCEMCDKKFLSKTALRNHIKVHTGQSNFVCETCGKELTSKQSLNDHTKLHLGLKPLTCETCGKCFSKRTTLRVHIQTHTGVKPYECKECGKRFTQSSSLVIHKRNHTGERPYKCHLCDSKFVSKPNLDSHLAKTHNVFGSTMQKNQHLSFLTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -