Xxan011028.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754469.1:9805794-9808842[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0034 0.069 14.1 6.0 1 23 60 82 60 82 0.98 2 20 8.7e-05 0.0018 19.2 3.2 1 23 88 111 88 112 0.94 3 20 0.023 0.47 11.5 4.6 1 23 118 140 118 140 0.98 4 20 0.48 9.8 7.4 5.5 1 23 146 169 146 169 0.94 5 20 0.00036 0.0073 17.2 3.1 1 23 174 196 174 196 0.95 6 20 0.21 4.2 8.5 5.4 2 23 206 227 205 227 0.97 7 20 1.5e-05 0.0003 21.6 0.2 1 23 230 252 230 252 0.97 8 20 1.8e-06 3.6e-05 24.5 0.6 2 23 259 280 258 280 0.97 9 20 1.4e-06 3e-05 24.7 1.7 1 23 286 308 286 308 0.97 10 20 0.16 3.2 8.9 3.2 1 23 314 337 314 337 0.98 11 20 0.0057 0.12 13.4 5.0 1 23 386 408 386 408 0.97 12 20 9.7e-05 0.002 19.0 4.6 1 23 414 437 414 438 0.95 13 20 0.032 0.66 11.1 4.0 1 23 444 466 444 466 0.97 14 20 0.034 0.7 11.0 2.3 1 23 472 495 472 495 0.95 15 20 9.4e-06 0.00019 22.2 0.9 1 23 500 522 500 522 0.98 16 20 0.00064 0.013 16.4 2.4 2 23 532 553 531 553 0.97 17 20 0.00016 0.0032 18.3 0.3 1 23 556 578 556 578 0.98 18 20 1.9e-05 0.00038 21.2 2.8 2 23 585 606 584 606 0.96 19 20 1.1e-06 2.3e-05 25.1 3.9 1 23 612 634 612 634 0.97 20 20 2.5 52 5.1 3.1 1 23 640 663 640 663 0.96
Sequence Information
- Coding Sequence
- ATGTCAAAAAGTTCTATTATTCATTGCAGGAATGATGTTTTTAAAACAGAAGAGAGAAATGAAATCGTAACACGAGcggaaaagaataattttgtcAGTAAGCGACTGACAAAACGGAAACGAAATAATAAGGGCTCTAGATCTGACGGTAAAGTTGTGCGTTCGTGCGACGGCCAGCACCGTTGTTCGATTTGCGACAAAACATTTAAACTCAGAACGCACGCGATGCGACATTACTTGACGCACATCGACTGCAAACCGTATTTTTGCGACATGTGCGACAAAACGTTCAAGTCGATCGACAATTTAAAGTCCCACATTACCAACAAACATCatattaataaagaattttttacttgCGACATTTGCAATCACAAATCGACGTCGAAACAGTCTTTGAAATATCACCGCGACACCCATCTTAATATCTACTCGTATCCCTGTTTGCAGTGCGAGTGCAAATTTCGCAGCAAGCAGTGTCTGAAAGATCACGTGGACAGTAAGCACAAAGGAATTAGATACAGTTGCGAAGTTTGCGGCAAGTTGTTCACGACGACGGCGAATCTTCAGAGACACTGCAAAAGGCACGAGCCGGACTATGTTCCGCCGGAATTGAAATGCAAAACGTGCGGCAAAGTGTACACGTGTCGCAGTAGTTTCTACGATCATAAAAAGAGTCACGACGGCTTCGCCTGCGACATTTGCGGCAAAGTGTTGAAGTCGAAGGAGAGTCTGAATCAACACATTTCGATGCATCGCGGCGAAAAACGGTTGAGCTGCGACTATTGCGGCAAACGTTTCGTGCGCGGCAGCAATTTGAAATTGCACGTCCGCACCCACACGGGGGAGAAGCCGCACGAGTGCGTCGAGTGCGGCAAGCGCTTCTCGCAACGCACCAGTCTCAAGGTTCACATGAGAGGACACAGCGGCGAGAGACCGTATCGCTGTCATTTGTGCGGAGACGGATTCGTGTGCAAACCGTTGCTCAATTCGCACATGCGCAGTTTCCACAATGAGGAAGTCGATGATTTTGATTGGAAACCGGATGTGAACGTTGAGAAAGATGTAAATGACAGCGATTCGAAAAACGGTTCGGCGAAGAAATGGAAGCGAAGTAGCGAGCCGGACGATAGATACATCAGACTGGCGGACGGACATCACTGTACCGTTTGCGACAAAGTGTTTCGAATTCGCGCTCACGTGATACGGCACTATCTCACCCACGTCGACGCGCGTCCATTTCCTTGCGACATGTGCGAGAAATGTTTCAAATCGGCCGACAGTCTCAAAACGCACATGACCAACAAACATCACATAAACAAAGAGTTCTTCGCGTGCGAGATTTGCGATCACAAATCGACCTCAAAACAGTCGCTGAAACTGCATCACGACACGCATTTAAACATCTACTCGTATTTCTGTAGCCAATGCGATCACAAGGCGCGTACGAAAGCCTCGCTCAAGGATCACATCGACAGCAAACACAAAGGAATCAAGTACAGTTGCGAGGTGTGCGGCAAACTGTTCAGCACGTCCGGCAATTTGACAACGCATTCGAAAAGGCACGCGGTCGGCGCGGTGCCCGTCGAGCTGAAATGCGAAACGTGCGGACGCGTCTATAACAATCGCaacagtttttataaacatcaaaaGTATCACGACGGCTTCACGTGCGACGTGTGCGGCAAAATGTTGCGGTCGAAAAAGAGCCTCGACGATCATATTCTGATGCATCGCGGCGAGAAGCGCTTGAGTTGCATGTATTGCGGCAAACGATTTGTGCGCAACTGCAATTTGAAGTTGCACTTGCGCGTTCATACGGGAGAAAAGCCGCACGAGTGCACGGTGTGCGGCAAATGTTTTTCGCAGCGGTCTAGCCTTAAAGTGCACTTGCGGGGACACAGCGGGGAGAGGCCGTATCGGTGCCATTTGTGCGGCGACGGATTCGTGTGCAAACCGTTGCTGACGGCGCACTTGCACAGTTTGCACAATGTGGAAGCGTCGGCGCCGCCCGGGATCGGTTACATTGACTAG
- Protein Sequence
- MSKSSIIHCRNDVFKTEERNEIVTRAEKNNFVSKRLTKRKRNNKGSRSDGKVVRSCDGQHRCSICDKTFKLRTHAMRHYLTHIDCKPYFCDMCDKTFKSIDNLKSHITNKHHINKEFFTCDICNHKSTSKQSLKYHRDTHLNIYSYPCLQCECKFRSKQCLKDHVDSKHKGIRYSCEVCGKLFTTTANLQRHCKRHEPDYVPPELKCKTCGKVYTCRSSFYDHKKSHDGFACDICGKVLKSKESLNQHISMHRGEKRLSCDYCGKRFVRGSNLKLHVRTHTGEKPHECVECGKRFSQRTSLKVHMRGHSGERPYRCHLCGDGFVCKPLLNSHMRSFHNEEVDDFDWKPDVNVEKDVNDSDSKNGSAKKWKRSSEPDDRYIRLADGHHCTVCDKVFRIRAHVIRHYLTHVDARPFPCDMCEKCFKSADSLKTHMTNKHHINKEFFACEICDHKSTSKQSLKLHHDTHLNIYSYFCSQCDHKARTKASLKDHIDSKHKGIKYSCEVCGKLFSTSGNLTTHSKRHAVGAVPVELKCETCGRVYNNRNSFYKHQKYHDGFTCDVCGKMLRSKKSLDDHILMHRGEKRLSCMYCGKRFVRNCNLKLHLRVHTGEKPHECTVCGKCFSQRSSLKVHLRGHSGERPYRCHLCGDGFVCKPLLTAHLHSLHNVEASAPPGIGYID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -