Xxan005139.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754466.1:593866-597843[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0022 0.045 14.7 1.5 1 23 236 258 236 258 0.98
2 16 1.1 23 6.2 1.2 1 20 264 283 264 286 0.82
3 16 1.4e-05 0.00029 21.6 0.2 1 23 292 314 292 314 0.98
4 16 0.00018 0.0036 18.2 6.5 1 23 320 342 320 342 0.98
5 16 0.0012 0.025 15.5 0.9 1 23 348 370 348 370 0.98
6 16 3.3e-05 0.00068 20.5 2.5 1 23 376 398 376 398 0.99
7 16 7e-07 1.4e-05 25.7 0.6 1 23 404 426 404 426 0.96
8 16 4.5e-05 0.00091 20.1 2.6 1 23 432 454 432 454 0.98
9 16 0.003 0.061 14.3 2.1 1 23 655 677 655 677 0.99
10 16 2.6e-05 0.00054 20.8 0.4 1 23 683 705 683 705 0.98
11 16 0.00018 0.0037 18.2 0.5 1 23 711 733 711 733 0.96
12 16 2.1e-06 4.4e-05 24.2 2.6 1 23 739 761 739 761 0.96
13 16 7.7e-05 0.0016 19.3 0.3 1 23 767 789 767 789 0.99
14 16 0.00011 0.0023 18.8 1.1 1 23 795 817 795 817 0.98
15 16 2.7e-07 5.5e-06 27.0 0.7 1 23 823 845 823 845 0.98
16 16 0.0001 0.0021 18.9 1.5 1 23 851 873 851 873 0.97

Sequence Information

Coding Sequence
ATGGAAAATACAGAAATAGCAAACGTGAAAAATAttggaattgaaaaaatttgtcgtaCGTGTTTAATGCATCCTGGCACAGTTCCTATATTAATGGATGAGGATTTTCAAAATGAGAACGCAAATAACCTAGCTGAAATGTTAGTTAACATTGCCAATGTATCCGTTTCTAAATACGACAGATATCCATCAACAATatgtaataattgtttaaaacgCGTAAACGACGCTTTTGAATTTCGCCAGCAATGTGAAAAAGTAACAATGATTTTAGACAGATACGTACATTTTGAAAACACGCTGAAATATGACACAGATTCCATTAAAGAGGAAATGGACTTCAAATATTTTGATGGTGGTGCTGCGGATCATACTGACGATAACGACGACGTTTTTAATGTTGACGTCAAACCGGACGTGGtatctttaattttaaacgaaAGTATTGAAAACAAACACAAATCGGAAGAGGAAACACgtcaaaatcgaaaaagaaaaaagaatttaaataccgcaaataaatatgtaaaattaaaaacaaaagtcaaATCCGATAATCAGTCTCAGAATATTTCATTGCCTAAAAAGCCGAAAATAAGAAGAGTTAGAAAAGAAAAATCGTCTACAGACGATGGAAAAGTGCCGCTGCACAGGTCGATCGAAATGCTGTCACTGGAAACGGAGCTGAGTGAcggtacaaaaatatttcagtgTTTCATTTGTAAAAAAGAATTGCGGAACCAAAAAGAACTAATCGAGCACAACAAGACTCACGACCGCATCAAACCGTACATCTGTCCGCAGTGCGGAAAGAACTACAAATGCCATCCGGAGTTGAGCGGACACATGTGGGCACATCGGGGAATCAAACCGTTCCGTTGCGACGTCTGCGGTAAGCAGTATGCGCAAGCCGAAAGTTTGAGGGTCCATTTGCGTTTGCACACGGGGGAGAGGCCCTATCATTGTAAGGATTGCGACCGTAAATTCAAACATTCGACCGAACTGGTTCTGCACAGAAGAACGCACACGAAAGAAAAACCTTTCATGTGTCCGTATTGCGGATTAAGGATGTCCGTATCGTCGCATATGGTGACGCATATACGTACGCATACGGGGGAGAGACCGTACAAGTGTACGTACTGCAGAAGGGGCTTCGTCAGAAGCAATTCACTGAAGACACATCTGTTAACACACACGGGCGTGAGAGATCATATATGTCCCGTTTGCAACAAGGCGTTCAGTAGAAAGTCGAACTTGAAAGTCCACGCAATGATTCACACCGACGAGAGACCGCATGTTTGTAAAGTTTGTGGGAAAGGTTTTATACAACGACACGTATTAAACAGTCATATGAATACGCAtAAACCAATTTTGGAAGATTTCTCGACACATTTGTTCGTTATTGTAATGGAtcaattaagtttaaaaaatgcagattttaataaaatatgtcgaACCTGTTTGAAAGAAATAGCTGATGTGCCGACGATTAGTGAGaacaaaatcaataaattaGTTTTCGAAATGTTATTAACCATCTGTAATCTTGAAATGTACGAAAACGATGGCCTGCCACCTTCGATGTGCTCTAAATGTTTAAGTCGAATAAAAGACGCGCACGCTTTCCGGAAACAATGTGAAAAATCGAATTTACTTCTTCAAgaacatataaaaaatttcattaaaatagaaGACAATAATCAGGACGTCTTTATTAAAGAGGAAGAAGAAGATAGTTTCGGACGATACGATACGGACGATTTCAAGCTAGACGAcgattctgtaaaaaataacattaagaacaTTAGCAATAAAATTACGAACGATCAAAATTCGTCTTCAAAAGGGAAGCGGAAACCACGTAAAATTGAAACGAAACCTCGAAGTATAAAAAACAGTGGAACTAAaaccaaaacaaaagaaatacacGTCGAATCTCTCAACGAAAATGGCGAGAAAAGCTACGTAtgttttcattgtaaaataaCATTCAACGCACAAAATGAATTAATCGAACATTATAAAACCCACGATCGTCAGTGTCCGTACATTTGTCCCAAATGTGGACATGGCTATAAACGTCCCTCAGATTTAAATGATCACGTTCTGCGCCACAACGGTATAAATCCGTACCTGTGTACGATTTGCGGTAGAGAATATAAATTCCGTGAGAATTTGATCGTGCATACACGGTTGCACCAAGGGGATCGACCGCACGCATGTACCGATTGTGGCAAAGCGTTTATTCATTTGTCGCAATTGAAACAACACCAGAGAATACACACCAAAGAGAAGCCTTATATGTGTCCTTATTGTGGATTGTGCGTATCGCTTCCTATCAGTTTGAGGGTACACATCAGAACACATACTGGGGAGAAACCGTACAAGTGTACCGAGTGCAGTAGGGGCTTTACGCAAGTGAATATGTTGAAACAGCATATGACGGTACACACGGGCGAAAAAAATTACGTGTGCTCGTACTGCAATAAAGCTTTTAGTCGTAAGTCGAATTTGACCGTCCACGAAATGATTCACACCGGAAAAAGACCTCACGTTTGTGGTTTTTGCGGAAAAGGTTTTATACAAGCACACGGTTTACGTTCACATTTAAACACGCATGTTAACATTTCTAGTTAA
Protein Sequence
MENTEIANVKNIGIEKICRTCLMHPGTVPILMDEDFQNENANNLAEMLVNIANVSVSKYDRYPSTICNNCLKRVNDAFEFRQQCEKVTMILDRYVHFENTLKYDTDSIKEEMDFKYFDGGAADHTDDNDDVFNVDVKPDVVSLILNESIENKHKSEEETRQNRKRKKNLNTANKYVKLKTKVKSDNQSQNISLPKKPKIRRVRKEKSSTDDGKVPLHRSIEMLSLETELSDGTKIFQCFICKKELRNQKELIEHNKTHDRIKPYICPQCGKNYKCHPELSGHMWAHRGIKPFRCDVCGKQYAQAESLRVHLRLHTGERPYHCKDCDRKFKHSTELVLHRRTHTKEKPFMCPYCGLRMSVSSHMVTHIRTHTGERPYKCTYCRRGFVRSNSLKTHLLTHTGVRDHICPVCNKAFSRKSNLKVHAMIHTDERPHVCKVCGKGFIQRHVLNSHMNTHKPILEDFSTHLFVIVMDQLSLKNADFNKICRTCLKEIADVPTISENKINKLVFEMLLTICNLEMYENDGLPPSMCSKCLSRIKDAHAFRKQCEKSNLLLQEHIKNFIKIEDNNQDVFIKEEEEDSFGRYDTDDFKLDDDSVKNNIKNISNKITNDQNSSSKGKRKPRKIETKPRSIKNSGTKTKTKEIHVESLNENGEKSYVCFHCKITFNAQNELIEHYKTHDRQCPYICPKCGHGYKRPSDLNDHVLRHNGINPYLCTICGREYKFRENLIVHTRLHQGDRPHACTDCGKAFIHLSQLKQHQRIHTKEKPYMCPYCGLCVSLPISLRVHIRTHTGEKPYKCTECSRGFTQVNMLKQHMTVHTGEKNYVCSYCNKAFSRKSNLTVHEMIHTGKRPHVCGFCGKGFIQAHGLRSHLNTHVNISS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-