Xxan022589.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754475.1:17127819-17130312[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0046 0.094 13.7 1.4 2 23 283 304 282 304 0.96
2 15 9.5e-05 0.0019 19.0 3.5 1 23 310 332 310 332 0.97
3 15 4.1e-06 8.4e-05 23.3 3.8 1 23 338 360 338 360 0.99
4 15 3.2e-05 0.00065 20.5 2.7 1 23 366 388 366 388 0.98
5 15 3e-05 0.00062 20.6 6.6 1 23 394 416 394 416 0.99
6 15 9.6e-06 0.0002 22.2 0.2 1 23 422 444 422 444 0.99
7 15 1.5e-05 0.0003 21.6 3.5 1 23 450 472 450 472 0.99
8 15 5.7e-06 0.00012 22.9 1.6 1 23 478 500 478 500 0.99
9 15 0.00029 0.006 17.5 6.5 1 23 506 528 506 528 0.99
10 15 2.7e-05 0.00055 20.7 0.8 1 23 534 556 534 556 0.99
11 15 1.6e-05 0.00033 21.4 4.8 1 23 562 584 562 584 0.99
12 15 0.00014 0.0028 18.5 0.8 1 23 590 612 590 612 0.96
13 15 1e-05 0.00021 22.1 1.0 1 23 618 640 618 640 0.98
14 15 0.0013 0.027 15.4 10.3 1 23 646 668 646 668 0.99
15 15 3.6e-05 0.00073 20.4 3.1 1 23 674 696 674 696 0.99

Sequence Information

Coding Sequence
ATGGAGAAAATACCGATAAATGGTAAAAACATAAGTGCGGTGTGTCGATTGTGTTTATCAAGTGACGATAGgatgatagatatattttgtttttcttctaGTATGGAACATCAAATTGCTGATGTGATTATGGAGTGTGTTCCAGTTCGAATAACTCGATACGACCAGATGCCAAATTCTATCTGCCGATTATGTTATACTCAACTGGAGAAAATCCATCATTTCCAGACGCAGGCAGTACAATCTGAGAAAACACTTCGACAGTATCTACAACAAATACATGTTTTTGACAAACAAACCAACCGTGGATGTTCTATTCAGATGCCTTCTGAAAATCCTTTAACTCACATCAATGCAGATATCCCAGTAAAATGTGAAATCTCAAATCTTCGAAATGTGTTTGGCGTGGATGCTAACTCGAAAGAAAACTCACTTGCGAATTCAGGACATCAAATTAAAGAAGAGCCTGTACatgaaaatttattaatcaAAACGGAATATATCGATAATACAATAGAAACTAAGAACAATGAAAGGGAAATAAGCTGTGAGGACACACAGTGCCATCTAGATAACACTGAAGTGAATGAAGACATGCTTGTCAATAAACATgacagaaaattatttttaaaatccgaaTTCACTGAGAAACTGACGGATGATAATTCTTTAATTTCAActgaatattttgataatacatttaACGACGGCATTAATGAAATCAGTTGTGAAGagacaaaaatcaatattgaaCACTTATCTCAATATCTAGAGAAACATGAAGAAGGTAACAAAAAAACATCGAAAAGTAATGAAAAGTGCAAATATTCAACGAAAAGGAAGTTGTATTGTGCTATTTGTAAAATGCGCTTTAACAGAATAGAAGATTTTAAGCGCCATAAACGTCTCCATACGACCGAGAAACCGTTTGAGTGCGATGtatgtaacaaaactttcaCCAAATCGAGCTGTTTAAAAATCCATAAAAGTATACATACTGGAAataaaccgtatcagtgtgacgtatgtaataagtgtttcactcGATCTTCAgttttaaatattcacaaacggacacatactggtgataaACCgcataaatgtaatttttgtaataaggGTTTTGTCCAGTTGAGCAATTTGATATCTCATAAACGTATTCATACAGGCGAGAAACCGTACAAGTGTGACGTATGTAGTAAGTGTTTCACCAGAATgagtcatttaaaaattcataaacgcATACATAGTGGTGAGAAACCCTATCAGTGCGGCTTATGCGGTGAGGGTTTCACTCGATCAGATGGACTAAATAGTCATAGACTTACGCATACATATGACAAAcagtatcagtgtgacgtttgcggtAAACATTTTACCAAATCAGGTTATTTAAAAACTCACAAATTAACACATACTGATGAGAAACCgtacaagtgtgacgtttgtagtaaGTCTTTCGTCAAgtcgaataatttaaaaattcataaacgtATACACACTGGAGATAAACCGTATACGTGTGAAATATGTAGTAAATGTTTTACTCATTCTCAGGTATTAAATAATCACAAACGGACGCATACTGGTGTTAAACCATACAAATGCGATTTTTGTGATACGGATTTCGTTCAGTTGAGCAATTTAATAACTCATAAACGTATTCACACAGGAGAAAAACCGTATAGGTGTGATGGGTGTAGTAAGTCTTTCACTAGAATGactcatttaaaaattcataaacgcacacataccggcgagaaaccgtatcaatgcgaCTTTTGTGGTGAGCGCTTCTCTCGATCAGATGTATTAAAGAGTCACAAGATTTTGCATACAGGTGACAAACGATATATGTGTGACGTTTGCGATAAGAATTTTACCAAGTCAGATGCTTTAAAGAatcataaattaacacatactggtgagaaaccgtacaagtgtgacgtttgtagtaaGTGTTTCACTAGAATgtgtcatttaaaaattcataaacgtacacatactggtgagaaaccgtatcagtgtgacttcTGTGGTAAATGCTTCCCTCGAACCGacaaattaaatattcacaaacttacacatactggtgataaatga
Protein Sequence
MEKIPINGKNISAVCRLCLSSDDRMIDIFCFSSSMEHQIADVIMECVPVRITRYDQMPNSICRLCYTQLEKIHHFQTQAVQSEKTLRQYLQQIHVFDKQTNRGCSIQMPSENPLTHINADIPVKCEISNLRNVFGVDANSKENSLANSGHQIKEEPVHENLLIKTEYIDNTIETKNNEREISCEDTQCHLDNTEVNEDMLVNKHDRKLFLKSEFTEKLTDDNSLISTEYFDNTFNDGINEISCEETKINIEHLSQYLEKHEEGNKKTSKSNEKCKYSTKRKLYCAICKMRFNRIEDFKRHKRLHTTEKPFECDVCNKTFTKSSCLKIHKSIHTGNKPYQCDVCNKCFTRSSVLNIHKRTHTGDKPHKCNFCNKGFVQLSNLISHKRIHTGEKPYKCDVCSKCFTRMSHLKIHKRIHSGEKPYQCGLCGEGFTRSDGLNSHRLTHTYDKQYQCDVCGKHFTKSGYLKTHKLTHTDEKPYKCDVCSKSFVKSNNLKIHKRIHTGDKPYTCEICSKCFTHSQVLNNHKRTHTGVKPYKCDFCDTDFVQLSNLITHKRIHTGEKPYRCDGCSKSFTRMTHLKIHKRTHTGEKPYQCDFCGERFSRSDVLKSHKILHTGDKRYMCDVCDKNFTKSDALKNHKLTHTGEKPYKCDVCSKCFTRMCHLKIHKRTHTGEKPYQCDFCGKCFPRTDKLNIHKLTHTGDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-