Xxan022594.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754475.1:17158840-17161038[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00043 0.0088 17.0 0.3 1 23 271 293 271 293 0.98
2 16 2.5e-06 5.2e-05 24.0 1.1 1 23 299 321 299 321 0.98
3 16 0.00018 0.0037 18.2 1.2 1 23 327 349 327 349 0.98
4 16 0.004 0.082 13.9 0.6 1 23 355 377 355 377 0.98
5 16 2e-05 0.00042 21.1 0.7 2 23 384 405 383 405 0.97
6 16 0.0035 0.072 14.1 0.5 1 23 411 433 411 433 0.97
7 16 0.00087 0.018 16.0 1.1 2 23 454 475 453 475 0.97
8 16 1.2e-05 0.00025 21.9 0.7 1 23 481 503 481 503 0.98
9 16 0.001 0.021 15.7 2.9 1 23 509 531 509 531 0.97
10 16 6.8e-06 0.00014 22.6 1.1 1 23 537 559 537 559 0.98
11 16 0.0051 0.1 13.6 2.6 2 23 566 587 565 587 0.94
12 16 3.8e-06 7.8e-05 23.4 1.2 1 23 593 615 593 615 0.97
13 16 7e-05 0.0014 19.4 3.8 1 23 621 643 621 643 0.97
14 16 7.6e-05 0.0016 19.3 1.8 1 23 649 671 649 671 0.97
15 16 1.7e-06 3.5e-05 24.5 2.9 1 23 677 699 677 699 0.99
16 16 0.00068 0.014 16.3 9.8 1 23 705 727 705 727 0.98

Sequence Information

Coding Sequence
ATGGATATCAGTGTCAACTCTGAACTTTGTACGACCATCAAAGAGGAATCAGGAAGTCAAGACAATTTTTGTAatgaactatttatttcagATATGAATTTCCAATGTGGAGAAATAAATGATAGGTTTACAGGCAGCTTGCTGTGCGAAGAAACAAAGATTACTATAAAATGCGAAAAAACTAGAACAGATATTGAAGAGAGAAAAGTATTAGAGTCTCAACCTCAATCGTTGCGAAAAGTTGATAAAAACTTTGATTTATCGTCGAACCTTGAAGTAAACATAAAATGTGAGCCAGAATTTGATGCAACATTTGACgatgaagttaatataaaacaagaaaacgaAATTGGTGATAATACATCGGTTTCAATATTTGCTAACGAAAACGGTAAGATAAACCGTAATCAATTTCAAATCGAAAAACGACGGGATATTACAAGACGAGAATCGTTTCAATGTGACGACATTACTTTGAAGCAAGGAGgattaaatagacttacaaaTATTGCCTCAGGTGAGGATTCAAAAATGACTGGTGAAGCAAGAAAAGTGGTTTGTGAAAAAAGTAAAGCAAGTATAGTAGATTTTAAACCTCAAGCGGTATGGATAACGGACAAAAACTTCGATTTACCATCGAACCttaaagtaaatataaaatgtgagcCTCAATTTGACGACTCGTTTGAGAATGGCGCGGAGAAAAACGAAATATCTGATAATGCAATAGGTGTGAAATCagtcaatgaaaaaataaaggGAAGTCGCAGTGATAAATGTAATCAGAGTGTGCCAAgcagtaaaaaattatatcagtGTGATGTATGCTTAAAGAATTTGACTCGTCCAGGCGACTTAAAAAGACACAAGTTaatacatactggagagaagcCGTATCAATGTGTtgtttgtaataagtattttactGATTCTAGCAATTTAAAGAAACACACTattgtacatactggtgagaaaccgtatcagtgtggcgtttgcaaaaaaagtttcagtcgCTCAAACGTTTTAAAAATGCACGAACTCAAACATTTTGTTGAGAAACCGTTTCAGTGTGAAGTTTGCGGAAAGGGTTACATTCaattaaatagtttaaaatttcataaacgTATACACACTGGTGAAAAACTtaatcagtgtgacatttgtgagAAGTCTTTTACTCGCTCGTACGATTTAGATAGACACAAGTTGATACATTCTGGAGATAAGCCATTtcagtgtgatgtttgtaataaattttttggtGATTCTGGTATTCTAAAAAAGCATAAACTCATACACTTGAAAACAAGTGACTGTAAAGAAACGGATAATCTCGTACATATTGATGAGAAACTAAATCAATGTGAAATCTGTAGTAAACATTTTGCACGCGCAAATGATTTAGATAGACACAAAttaatacatactggtgagaaaccatatcagtgtgacgtttgtaataagggCTTCACTCAATCGAACAGTTTAAAAGTTCATAAATTAATACACACAGGTGAGAAACCGCATCAGTGTGACTTCTGTAGTAAGTATTTTGTTCGCTCAAGTGACTTAGATAGGCATAAGTTAATACATACTGGGGAGAAACCATATAGATGTGACATATGTCGAAAGGGTTTCACTCAATCGTCCAGCTTAAAAATTCATAAGGCTACACACGCTGTTGAGAAACCGTGTCATTGTGAAATTTGTGATAAATATTTTGTCCGTATAATCGATCTAAATAGACATAAGTTAATACATACTGGGGAGAAGCCATATCAATGTGAAATCTGTAATAAGAATTTCATAAATCCCAGCAGTCTAAAGAAACATAAATtcatacatactggtgaaaagcCTCATCAGTGTGATGTTTGTCATAAATATTTTACCGATCCTAGTACTTTGACGAAACACAAGatcatacatactggtgagaaaccgtatcggtgtgacgtttgtaataagaatttTTCCCGTTCAACCGACCTAGATAGACATAAATTTGTACATACTGGAGAAAGACCGTATCAGTGCGATGTTTGTAACAAACGTTTCGTCCAttcatacaatttaaaaattcatacccgtatacataccggtgagaaacctcaTCAATGTAGTGTTTGCAAAATGTGTTTCACTCAATCGCATCAGTTAAAAAGACATACACAAACACATGTTTTTGAGCAGCAGTGA
Protein Sequence
MDISVNSELCTTIKEESGSQDNFCNELFISDMNFQCGEINDRFTGSLLCEETKITIKCEKTRTDIEERKVLESQPQSLRKVDKNFDLSSNLEVNIKCEPEFDATFDDEVNIKQENEIGDNTSVSIFANENGKINRNQFQIEKRRDITRRESFQCDDITLKQGGLNRLTNIASGEDSKMTGEARKVVCEKSKASIVDFKPQAVWITDKNFDLPSNLKVNIKCEPQFDDSFENGAEKNEISDNAIGVKSVNEKIKGSRSDKCNQSVPSSKKLYQCDVCLKNLTRPGDLKRHKLIHTGEKPYQCVVCNKYFTDSSNLKKHTIVHTGEKPYQCGVCKKSFSRSNVLKMHELKHFVEKPFQCEVCGKGYIQLNSLKFHKRIHTGEKLNQCDICEKSFTRSYDLDRHKLIHSGDKPFQCDVCNKFFGDSGILKKHKLIHLKTSDCKETDNLVHIDEKLNQCEICSKHFARANDLDRHKLIHTGEKPYQCDVCNKGFTQSNSLKVHKLIHTGEKPHQCDFCSKYFVRSSDLDRHKLIHTGEKPYRCDICRKGFTQSSSLKIHKATHAVEKPCHCEICDKYFVRIIDLNRHKLIHTGEKPYQCEICNKNFINPSSLKKHKFIHTGEKPHQCDVCHKYFTDPSTLTKHKIIHTGEKPYRCDVCNKNFSRSTDLDRHKFVHTGERPYQCDVCNKRFVHSYNLKIHTRIHTGEKPHQCSVCKMCFTQSHQLKRHTQTHVFEQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-