Xxan023949.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754476.1:17849574-17852987[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00022 0.0045 17.9 3.0 1 23 279 301 279 301 0.99 2 15 0.00015 0.0031 18.4 4.9 1 23 307 329 307 329 0.97 3 15 5.1e-05 0.001 19.9 4.6 1 23 335 357 335 357 0.97 4 15 5.1e-05 0.001 19.9 4.6 1 23 363 385 363 385 0.97 5 15 1.4e-05 0.00029 21.6 4.1 1 23 391 413 391 413 0.97 6 15 5.1e-05 0.001 19.9 4.6 1 23 419 441 419 441 0.97 7 15 0.00015 0.0031 18.4 4.9 1 23 447 469 447 469 0.97 8 15 6.5e-06 0.00013 22.7 2.1 1 23 475 497 475 497 0.97 9 15 0.00028 0.0058 17.5 4.4 1 23 503 525 503 525 0.97 10 15 6.5e-06 0.00013 22.7 2.1 1 23 531 553 531 553 0.97 11 15 1.1e-05 0.00023 21.9 4.4 1 23 559 581 559 581 0.97 12 15 4.9e-06 0.0001 23.1 2.2 1 23 587 609 587 609 0.97 13 15 4.9e-06 0.0001 23.1 2.2 1 23 615 637 615 637 0.97 14 15 6.5e-06 0.00013 22.7 2.1 1 23 643 665 643 665 0.97 15 15 0.00032 0.0067 17.3 4.1 1 23 671 693 671 693 0.99
Sequence Information
- Coding Sequence
- ATGAAAGAAATATCAATAATTGTATCCGGATTAAGTCCAATatgtcgattgtgcttatcaaGTGGCGTTACACTCTTAGACATATTCCATTTTTCATCGAAAATGGAGAATCGGTTGGCTGGTATTATCATGAAATGTGCTGCTGTACAGATAACCAGGGGCGATGAAAAGCCGAATTTCATCTGCCAATCATGTTACACTAAACTGGAGGAAACTCATCAGTTCTTGACTCAAATAGAACAGTCTGACAGAACACTCCAACGTTATCTTCAACTATTAGGCGTTTCTGCCAAATCAGTCAAGACTGAACGTTCTATTCAACTTTCTGAAGAGAATTTAACCCTTAACATTAATAAtgatattatgaaaaatgaaaatttagaaCTCAACGATGTGTTTGACATGAATCTTAATTGGAATGAGGTGGGGTCTGGAGCTGAcattaatgaaaatgaaaataacaataacaaggAAACGTGTTCAAAATCCGAAATTAAAGTCGAACCGGAtgatgagaatttttttttaccaacatGGTGCGCAGATAGCACAAAAGACGAAGAATTCATCTGTGAAGAGTTTAAGATCGACATAAGTGAGACAAAAGTGAGCGAAACAACGACAGTCAATTGGAAAGAGCAAgaacatgaaaattataatgtagCGAACAAATTCGTGGACGAAATATCGTTAAATTCCAAAATCAATGATAAAAATACGGATGATAATGAATTAATTCTAACAGAATCAGTCGATGACACGGAAAACGCTTCATCTAACGGCGATGTAAATGAAATTAGCTGCAAAGATACGaagataaattttgaaaaactatataaatgcAACGTTTGTATTAAATGCTTTGTTACCTCCAAAGAATTAAAGATTCACCGACGAATACATACCGGAAAgagaccttatcagtgtgacctttgtaataagcgtttcaCTCAATTATGCAATTTAAATCGTCACAAGCTTCAacataccggcgagaaaccttatcagtgtgacctttgtaataagcgtttcaCTCGATCAGGCCATTTATATCGTCACAAGCTTCAacataccggcgagaaaccttatcagtgtgacctttgtaataagcgtttcaCTCGATCAGGCCATTTATATCGTCACAAGCTTCAacataccggcgagaaaccttaccaatgtgacctttgtaataagcgtttcaCTCAATCAGGCCATTTAACTCGTCACAAGCTTCAacataccggcgagaaaccttatcagtgtgacctttgtaataagcgtttcaCTCGATCAGGCCATTTATATCGTCACAAGCTTCAacataccggcgagaaaccttaccaatgtgacctttgtaataagcgtttcaCTCAATTATGCAATTTAAATCGTCACAAGCTTCAacataccggcgagaaaccttatcagtgtgacctttgtaataagcgtttcaCTCAATCAGGCCAATTAAATCGTCACAAGCTTCAacataccggcgagaaaccttatcagtgtgacctttgtaataagcgtttcaCTCAATTATGCGATTTAAATCGTCACAAGCTTCAACATACCGGCgaaaaaccttatcagtgtgacctttgtaataagcgtttcaCTCAATCAGGCCAATTAAATCGTCACAAGCTTCAacataccggcgagaaaccttatcagtgtgacctttgtaataagcgtttcaCTCGATCAGGCCATTTAACTCGTCACAAGCTTCAacataccggcgagaaaccttaccaatgtgacctttgtaataagcgtttcaCTCGATTAAGCGATTTAAATCGTCACAAGCTTCAacataccggcgagaaaccttaccaatgtgacctttgtaataagcgtttcaCTCGATTAAGCGATTTAAATCGTCACAAGCTTCAACATACCGGCgaaaaaccttatcagtgtgacctttgtaataagcgtttcaCTCAATCAGGCCAATTAAATCGTCACAAGCTTCAacataccggcgagaaaccttatcagtgtgacatttgtaagaaatgtttctTGGACTCTTCAACTTTAAGtaaacacaagcgtatacatactcGTTGA
- Protein Sequence
- MKEISIIVSGLSPICRLCLSSGVTLLDIFHFSSKMENRLAGIIMKCAAVQITRGDEKPNFICQSCYTKLEETHQFLTQIEQSDRTLQRYLQLLGVSAKSVKTERSIQLSEENLTLNINNDIMKNENLELNDVFDMNLNWNEVGSGADINENENNNNKETCSKSEIKVEPDDENFFLPTWCADSTKDEEFICEEFKIDISETKVSETTTVNWKEQEHENYNVANKFVDEISLNSKINDKNTDDNELILTESVDDTENASSNGDVNEISCKDTKINFEKLYKCNVCIKCFVTSKELKIHRRIHTGKRPYQCDLCNKRFTQLCNLNRHKLQHTGEKPYQCDLCNKRFTRSGHLYRHKLQHTGEKPYQCDLCNKRFTRSGHLYRHKLQHTGEKPYQCDLCNKRFTQSGHLTRHKLQHTGEKPYQCDLCNKRFTRSGHLYRHKLQHTGEKPYQCDLCNKRFTQLCNLNRHKLQHTGEKPYQCDLCNKRFTQSGQLNRHKLQHTGEKPYQCDLCNKRFTQLCDLNRHKLQHTGEKPYQCDLCNKRFTQSGQLNRHKLQHTGEKPYQCDLCNKRFTRSGHLTRHKLQHTGEKPYQCDLCNKRFTRLSDLNRHKLQHTGEKPYQCDLCNKRFTRLSDLNRHKLQHTGEKPYQCDLCNKRFTQSGQLNRHKLQHTGEKPYQCDICKKCFLDSSTLSKHKRIHTR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -