Xxan014937.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754471.1:41741800-41746042[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 8.1e-05 0.0017 19.3 0.8 1 23 192 214 192 214 0.96
2 16 0.052 1.1 10.4 0.8 2 23 255 276 254 276 0.97
3 16 0.00077 0.016 16.2 0.7 1 23 282 305 282 305 0.97
4 16 0.00068 0.014 16.3 4.4 1 23 322 344 322 345 0.96
5 16 3.1e-07 6.4e-06 26.8 1.6 1 23 350 372 350 372 0.99
6 16 0.12 2.5 9.3 0.3 2 23 474 495 473 495 0.97
7 16 4.1e-06 8.3e-05 23.3 0.3 1 23 501 524 501 524 0.98
8 16 3e-05 0.00061 20.6 0.9 1 23 529 551 529 551 0.99
9 16 0.0058 0.12 13.4 2.5 1 23 557 579 557 579 0.91
10 16 0.00076 0.016 16.2 3.0 1 23 585 607 585 607 0.95
11 16 4.2e-06 8.7e-05 23.3 0.1 1 23 613 635 613 635 0.96
12 16 0.0001 0.0021 18.9 0.1 1 20 641 660 641 663 0.92
13 16 4.3e-07 8.8e-06 26.4 0.6 1 23 669 691 669 691 0.98
14 16 0.00019 0.0039 18.1 1.7 1 23 697 719 697 719 0.96
15 16 4.1e-06 8.5e-05 23.3 1.0 1 23 725 747 725 747 0.98
16 16 0.0051 0.1 13.6 4.6 1 23 753 775 753 775 0.98

Sequence Information

Coding Sequence
ATGAATGCATTTACAAATATTTGCAGAACTTGCATGAAAACTTGTAAAGAGTCATTAATATCTTTATTTTCTACGCAAATTTGCTTTTCTAAGTCTATGCagtttaaagaaatattatggGAATGTACCTCAGTTCAGATTTCATCGAACGATGATTTACCTAAATCGATATGTGAAAAATGTGCCGACCAGTTGAAAATCGCCTATGAGTTCAAGCTTATGTGTCATAATACTGAAAAAGAGTTATTAAAACTGATTGGAAAAGAAGAAgcaagtaatataaaaaatgagctAGCtattaaagaagaaattatttcgATAGAAACggttaatattaaaaacgaaCAGATCAATACTTTATCTGTTGATGAAAAGTTTACCGATGAATTGGATAATACCGATGATTGGcaaattaataatgaaattgaGCCTGAACAAAAACTAATAGTcactataaaaacaaaacaaattcatAGAACATTGAAACCGTTTAAAAAAGGTGCCGAATGCAATGAATATGCAAAAGTAATTAACAAGAATAATGATATTCAAACACATTCGTGTGAAGAAACGTATCTGTGCCAAGTCTGTTCAGAATCATTTACCACCAAGTCTGATTTAtctgaacatttaaaaaatcattccgAAAATAATGACAACCTCGATGACAATAGTCAAGAAAATGAGGAACAAACTGAAGGTATTCATCCCGACTTAGAATATGTTAGAAATATACCTAAGGAACAATTTAAAGTAGgtgtaaaatgcaataaatgtaCCAGAACATTATTCAGCAGATCTGATATGGAAATACATGTCATTCGTCACATAGGAATAAAAAAGTTTCCGTGTCCGCTGTGTTCGAGATCGTTTGTAGTATTTTATGATTTGAcgaatcacaaaaaaaagataCATTCTTCAAATAAAGACAACCcgcaagaaaaaaaatcaacagttAGTTCATTTGAATGTAAAATGTGTTCAAAGACGTTTCCGCGAAAAAAAACGTATGATTCACATATGATACGACACCACGGTGTCAAAAAATTCACGTGTGATCTATGTCCGAAACGGTTTGTTTCGCAATATGATTTAAAAAGACATTTGAGGACGCATGGGGATCTGTCGGACTTCCAATCGAAGCACTGTATTAGAAACTTTGATACGGACGTCAAGATTGACGAAAATATGATCGAAAATGCTAATCTTTCCAGCAAGACAATTTCTGGATGTTTTGAACTGAATGATACGCACATGAATAGTTCAACTGAAAATTCTAGTGCAGTTAGTGAGTTTGGTGAACGCGACGTTTTAAAATCGAACGATTTAACAAAATCTCAGTCTATCGCAAACGAAACCTTATCTACAGATTTTGAGTATCTCAAAAgcatttcaaaaatacaatttaaaaacggTGTAAAGTGTGTCCAATGTCCGAGAGTTCTTTACAGAAGATTAGATATGGAAAAACACATTAGTCGACAtttagaaataaagaaattttcgTGTGAAATATGTGGTAAGTCGTTCGTAGTTATCTCCGATTTAACCAGacataaaaaaactgtacaTTCAAGTTTAAAGTTCAAGTGTGAAGTGTGTCCGAAGGAATTCATGACGGTACGTTATTTGAAAAGACATTTGAGGATACACGGAGAGTTGACGGGATTTCATTGCAAACATTGTTCCAAGAGTTTTGATACCGGTGATGAATTGAAGGTTCACGCCGTTGAACACGAAAACGATACTCCACACATTTGCCAAGAATGCGGAAAACAGTTTTCGAAAAGGGAAAATTTGCATCTCCACAAGGCTGTCCACACAGGCAAAAAGCCTTATTTATGTACAGTCTGCGGACGAGCTTTTGCTCTCTCAAGTAACTTAATTGTTCATATGAGAATACACAGCGGAGAAAAACCGTATGCATGTAAAGTGTGCGGCAAAACGTTTGCGCAGTGGGCATCTCTACGAGGTCATTTGCCTTCTCATTCGGACGAAAAGCAGTTTGTGTGCCAGACTTGTGGCAAGGCGTTCAGTCGAAACAATGCGCTGAGAGCTCATCTGAGACGCCACGCCGGCGTACGCAATTTTCCTTGTACAAAGTGCGAAAAGAGATTTTATAGCAGCGACGGACTCAGGAGACATTTTGTTACGCACACAGGAGAGAAGAATttcaaatgtgaattttgcgaCAAAGCATTCAATCGATCGAGTACGCTGCGCGTTCACGCTAAAATTCACAGCGGCGAACGACCGTTTGTCTGTACGGTGTGTGAACGAAGTTTTCTACAAAAACATTGTCTTATTAGTCATATGAATACACATAAATAA
Protein Sequence
MNAFTNICRTCMKTCKESLISLFSTQICFSKSMQFKEILWECTSVQISSNDDLPKSICEKCADQLKIAYEFKLMCHNTEKELLKLIGKEEASNIKNELAIKEEIISIETVNIKNEQINTLSVDEKFTDELDNTDDWQINNEIEPEQKLIVTIKTKQIHRTLKPFKKGAECNEYAKVINKNNDIQTHSCEETYLCQVCSESFTTKSDLSEHLKNHSENNDNLDDNSQENEEQTEGIHPDLEYVRNIPKEQFKVGVKCNKCTRTLFSRSDMEIHVIRHIGIKKFPCPLCSRSFVVFYDLTNHKKKIHSSNKDNPQEKKSTVSSFECKMCSKTFPRKKTYDSHMIRHHGVKKFTCDLCPKRFVSQYDLKRHLRTHGDLSDFQSKHCIRNFDTDVKIDENMIENANLSSKTISGCFELNDTHMNSSTENSSAVSEFGERDVLKSNDLTKSQSIANETLSTDFEYLKSISKIQFKNGVKCVQCPRVLYRRLDMEKHISRHLEIKKFSCEICGKSFVVISDLTRHKKTVHSSLKFKCEVCPKEFMTVRYLKRHLRIHGELTGFHCKHCSKSFDTGDELKVHAVEHENDTPHICQECGKQFSKRENLHLHKAVHTGKKPYLCTVCGRAFALSSNLIVHMRIHSGEKPYACKVCGKTFAQWASLRGHLPSHSDEKQFVCQTCGKAFSRNNALRAHLRRHAGVRNFPCTKCEKRFYSSDGLRRHFVTHTGEKNFKCEFCDKAFNRSSTLRVHAKIHSGERPFVCTVCERSFLQKHCLISHMNTHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-