Xxan021433.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754474.1:16203833-16211138[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.00092 0.019 15.9 0.2 2 23 207 228 207 228 0.97
2 24 0.00031 0.0063 17.4 5.1 1 23 236 258 236 258 0.98
3 24 0.0044 0.09 13.8 0.4 1 23 264 286 264 286 0.98
4 24 0.045 0.92 10.6 0.3 2 23 292 313 291 313 0.96
5 24 0.005 0.1 13.6 0.4 1 23 318 340 318 340 0.91
6 24 0.00094 0.019 15.9 2.7 1 23 346 369 346 369 0.97
7 24 4.7 96 4.3 2.4 2 23 377 395 376 395 0.86
8 24 0.014 0.29 12.2 2.2 1 23 402 425 402 425 0.95
9 24 0.00066 0.014 16.4 2.7 3 23 436 456 435 456 0.99
10 24 8.2e-06 0.00017 22.4 0.4 3 23 464 484 462 484 0.96
11 24 2.2e-05 0.00046 21.0 0.3 1 23 490 512 490 512 0.98
12 24 1.4 30 5.9 0.2 1 13 518 530 518 531 0.93
13 24 0.00021 0.0043 17.9 5.2 2 23 678 699 677 699 0.95
14 24 0.00023 0.0047 17.8 4.8 1 23 707 729 707 729 0.98
15 24 0.0034 0.071 14.1 0.8 1 23 735 757 735 757 0.99
16 24 0.07 1.4 10.0 0.8 2 23 763 784 762 784 0.96
17 24 0.0035 0.072 14.1 2.7 1 23 789 811 789 811 0.95
18 24 0.00013 0.0027 18.6 3.4 1 23 817 840 817 840 0.97
19 24 6.4 1.3e+02 3.8 0.1 2 12 848 858 847 866 0.86
20 24 0.063 1.3 10.1 3.0 1 23 873 896 873 896 0.94
21 24 0.011 0.22 12.6 4.6 3 23 907 927 906 927 0.98
22 24 9.4e-05 0.0019 19.0 0.2 3 23 935 955 933 955 0.97
23 24 6.1e-05 0.0013 19.6 0.3 1 23 961 983 961 983 0.98
24 24 3e-05 0.00061 20.6 2.9 1 23 989 1011 989 1011 0.98

Sequence Information

Coding Sequence
ATGGTGATTGTAAATCACAACTTAGAAGTTATAAGAATGTTGCACACTTGTACCCGAATAAAGATTGGTTTAGACGATCGCTTGCCTTCTCATATTTGTTATGACTGTTCTTACGAAGTTGAGAAATCGTTCAAATTTAAACAAGACTGCGAAAGACATGATCGGTTATTAAAAAGGATTCTTAAAGAGTACGATGAGCGACAACAGCTATCGTCTCAACTGGTGCTTGTTAAAGAAGAAACTGCGAATGAACGAagcaataaacaaaatatagaaaatgaaGACGATCCAATAAAAGAAGAAAGCAGCGATGATAACAACGACGATGATTTCAGTGACCTTTGGAAGCAAGATGAAAATGACGACTTCGAAGAggataataatgaaaaagatCAGAAAAACGGTAGCTATGTAGACCCATCGTACAATGTAGAAACGGTTATAAAGTCTGAAGAAAAAGAAGATCGTTTGAAATGTGAAAATTCTAATAACAGTAAAAACGatcatttaattttgaatattaaatcGTGTACAGTCGGAGGCAGTAATACCAACAAAGAAGTACCTAAAAAACCTGCCCTGTACTTCGATCCAGAAAAATGCGACGAAAAAACGCGTACATGCAAAATATGCAACAAAGCCTTAGTCAATATTTATTCGTTAGCACGTCACATGGAAATGCATAACGAAAATCGCAAATTTGCGCACACTTGTAAAGTTTGCAGCAAAGGTTTCTACGAACTGGGACACTTGACAAAACACATGCGTCGGCACGAAGGAAACAAACGATACTTTTGCGAGATATGCAATAAAGGCTTTTACGAACTGAGCGCCCAAGCAGTACACATGAAAAAGCACAAAGTTAAGCCAATGCCTTGCGATATATGCGGAAAGAAGTTCCTCGTAAAATTACAACTAGAAATTCATAAAAAGTCGCACGAAGAGTTTAAACATTTCTGTCCCGATTGTGGCAAAGGTTTTCCGGCTTTacgtctattaaaaaaacattcggTCGTTCACAACAAAGAAAAACCTTTCATGTGTTTAGAATGCAACGGTTTCTTCAAACACGAATCTACGCTACGCAAACATATAAAAACGATACACGAAGGCATAAAAGAAAGAGACGTTTGCAATGTGTGCGGCAAATCGGTATCGTGTTTAAAATACCATATGTTCAAACATTACGGCGGGGAGAAAAGATTTAAATGCAACGAATGCACGTTGGCGTTCCACTTAAATAGTCAGTTGACGCAACACGTTTTGCAGAAACATCGCGGCGAAAAGCGATCGTGCACGGCTCTGTGCACGATTTGCGGCAAAGAATGCCATTCGCCGAGAGATCTGGAAATTCATATGCGAAAACACACGGGCGAAAAACCGCTCGCTTGTACGTCGTGCGACAAGAAATACAAAACGCCTTCGGCCCTGCAAGTCCACATGAGATCGCACACCAACGAACGGCCGTACATATGCAGCATCTGCGGCAAAGGATTCTTTACGAGTACGGTCTTAAAAAATCATATCAGAATTCATACTGGAGAGCGACCGTTTGTTTGTCAGTTGTGTCAAAGAGCGTTTACGCAAAAGATCGGTTCAGACGATGGCTTACCTTCGCAATTGTGTAACGACTGTTTTGGCGAAATAGAGAAACTTTACAAATTCaaaaagaaatgtgaaaaacACGATAAACTGTTACGCAAAATCCTTCAAGAATACGAAGACAAAGAACAAATATCAAACAATAGAGAAATATCGAACATCAAAGAAGAAAGTTTGCTTCAAAACGATATAGGTAATTATAGTGACTATAGCGACTTATGGAAAGACGACGATTCGAATAGCGATTACGTTAATCCTACGATTAAAGTAGAAACTGTAATAAATTCACCGATAAAAACAGAAGACAGCACGGATCAGTCTCATTCAGATTCGAAAAAAACATCGGCGGAAGATTCtagcacaaaaaaaattacgtctaaaaaaaattcgttaacGTTCGATCCTGAAAAATGTGACGAAATAGCCTGTACctgtaaaatatgtaataagtcgttttataatttacattcgTTGGCTAGACACATGGAGCAACATAACGAAAATAGAAAATTCTCGCATACTTGCAAAGTTTGTAATAAAGGGTTCTACGAACTGGGTCACCTCACGACGCACATGCGCCGTCACGACGGAAACAAAAGATACAAGTGTGAATTTTGCAACAAAGGTTTTTACGAGCTCAGCGCTCAAGCCGTTCACATGAAGAAACACAACGTTGAACCGATGCCGTGCGATAAGTGCGACAAAAAATTTCTAGTTAAATTACAGTTGGAAATTCACAAGAAGACGCACGAAGAATTTAAACATTTCTGTCCCGATTGCGGTAAAGGTTTCGCCGTATtgtgttctttaaaaaaacattcgataaaacacaaaaaagacAAGCCTTTCATGTGCCAGCAGTGCAATCGTTGTTTCAAACAGGAGTTCGCTTTGCGCAAACACATAAAGGTCATTCACGAGGGTATCAAAGAACGGGACGTTTGTAACGTGTGTGGCAAATCGGTCGCTCGAATCAAATACCATATGCTCGAACATTACGGCGGCGAAAAGAAATTCAAATGTAACGAGTGTCCGCTAGCTTTCGATTTGAACTGCCAGTTGACTCAACACGTTTTGCACAAACATCGCGGTGAAAAACCTACTCGCAAAGCGCTCTGTACGATATGTGGTTTCAAGTGCTACACGCATCGCGACTTGGAAATTCATATGAGAAAACATACGGGAGAGAAGCCGTTGGCCTGTACGATGTGCGAGAAGAAATACAAAACGCCGGCGGCTCTAAGAATTCACGTCCGAACTCACACGAACGAGCGACCGTACATTTGCAGCGTCTGCGGAAAAGGATTTTATACGAGTACCGTGCTAAAGAACCATGTCAGGATTCATACCGGGGAGAGACCTTTCGTGTGTCAGTTGTGTCATCAggcgttcactcaaaaatcggTACTtcaaacgcatatgaaaacacaTTCCTGA
Protein Sequence
MVIVNHNLEVIRMLHTCTRIKIGLDDRLPSHICYDCSYEVEKSFKFKQDCERHDRLLKRILKEYDERQQLSSQLVLVKEETANERSNKQNIENEDDPIKEESSDDNNDDDFSDLWKQDENDDFEEDNNEKDQKNGSYVDPSYNVETVIKSEEKEDRLKCENSNNSKNDHLILNIKSCTVGGSNTNKEVPKKPALYFDPEKCDEKTRTCKICNKALVNIYSLARHMEMHNENRKFAHTCKVCSKGFYELGHLTKHMRRHEGNKRYFCEICNKGFYELSAQAVHMKKHKVKPMPCDICGKKFLVKLQLEIHKKSHEEFKHFCPDCGKGFPALRLLKKHSVVHNKEKPFMCLECNGFFKHESTLRKHIKTIHEGIKERDVCNVCGKSVSCLKYHMFKHYGGEKRFKCNECTLAFHLNSQLTQHVLQKHRGEKRSCTALCTICGKECHSPRDLEIHMRKHTGEKPLACTSCDKKYKTPSALQVHMRSHTNERPYICSICGKGFFTSTVLKNHIRIHTGERPFVCQLCQRAFTQKIGSDDGLPSQLCNDCFGEIEKLYKFKKKCEKHDKLLRKILQEYEDKEQISNNREISNIKEESLLQNDIGNYSDYSDLWKDDDSNSDYVNPTIKVETVINSPIKTEDSTDQSHSDSKKTSAEDSSTKKITSKKNSLTFDPEKCDEIACTCKICNKSFYNLHSLARHMEQHNENRKFSHTCKVCNKGFYELGHLTTHMRRHDGNKRYKCEFCNKGFYELSAQAVHMKKHNVEPMPCDKCDKKFLVKLQLEIHKKTHEEFKHFCPDCGKGFAVLCSLKKHSIKHKKDKPFMCQQCNRCFKQEFALRKHIKVIHEGIKERDVCNVCGKSVARIKYHMLEHYGGEKKFKCNECPLAFDLNCQLTQHVLHKHRGEKPTRKALCTICGFKCYTHRDLEIHMRKHTGEKPLACTMCEKKYKTPAALRIHVRTHTNERPYICSVCGKGFYTSTVLKNHVRIHTGERPFVCQLCHQAFTQKSVLQTHMKTHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-