Xxan020377.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754474.1:4957602-4961542[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 6.9e-05 0.0014 19.5 1.2 1 23 231 253 231 253 0.97
2 15 0.0013 0.026 15.5 6.1 1 23 261 283 261 283 0.99
3 15 5.1e-05 0.001 19.9 4.1 1 23 289 311 289 311 0.99
4 15 1.2e-05 0.00025 21.9 4.1 1 23 317 339 317 339 0.98
5 15 1.6e-07 3.2e-06 27.8 0.9 1 23 345 367 345 367 0.99
6 15 3.1e-05 0.00063 20.6 3.1 2 23 374 395 373 395 0.97
7 15 2.1e-05 0.00044 21.1 1.7 1 23 401 423 401 423 0.99
8 15 0.00021 0.0044 17.9 3.8 1 23 598 620 598 620 0.98
9 15 5.8e-06 0.00012 22.8 1.3 1 23 626 648 626 648 0.99
10 15 3.1e-06 6.4e-05 23.7 2.2 1 23 654 676 654 676 0.99
11 15 5.9e-06 0.00012 22.8 0.5 1 23 700 722 700 722 0.99
12 15 3e-06 6.2e-05 23.7 1.3 1 23 728 750 728 750 0.99
13 15 2.7e-06 5.5e-05 23.9 1.7 1 23 756 778 756 778 0.99
14 15 0.0023 0.047 14.7 6.0 1 21 784 804 784 806 0.95
15 15 1.5e-05 0.00031 21.5 6.2 1 23 812 834 812 834 0.98

Sequence Information

Coding Sequence
ATGTCTAATAATTCGGTACAGTACAACTTCATGCAGACGTTGCATGCTCTTGAGAGCATGACAAATGGTGATGAAgataaaaataagatttctaAAAAGAGTGACAGATTAACATCCAGTATTGAAAAAGACATGTCGATAAATCGAGTCGGTTGTATCGGTCAAGAAGCAGATGACGATTTTTCGTGTGTCGTCATCAAACATGAAGAAATAGATTTGAGTGACTCTGAGATTCCGAATAATGAAACGGATGTTAAGCCTCAGATATTCAACACAGTAAATACTAACAAACATTCGGatttaattgtgaaaataaaaccTGAGCCAATTGAAATTGAGAGCCGTGTAAAACAAGAATTCGTTTTTAATCAAGGAACGGGTCCTACAGATGCCGCCATTAAAAATGAGGAATCAGAAACAAGTCTCACAGACACTGCGTTTTCATTTGAAGAAGCAAAAACCTGGAACGATAGTAATGAACAGGATTTCAACTGTTTAAAAGCTAATACGAGTGTAAAATGTGATCCTTTAGCTACAGAGACCAgcataaaacaagaaaatgaaGCGTGTGTTACATCGTTTTCGACATTTAGTGGTAGTGACGGTGATACCGATGTCAATAGTGGACATGATCGATCTGTGGCAGTGAGTGGAATTGATTCAgtggataaaattaaaaacaaaccgTCATTTaattgtgacgtttgtaataagactTACATCCGGCAAGACCGATTAAGAAATCACATTCTCAAACATACACAAGCCagtgagaaaccgtaccaatgcGATGTGTGCAGTAAGAATTTTTCTCATTTGTGTAATCTAAACTATCACAAACGTATTCATacgggtgagaaaccgtatcgatGCGATGTGTGTAATAAGACTTTTTCTCGTTCGTGTTCTTTGAGTGATCACAAACGTATTCATACCGGTAAGAAACCATTCCAGTGTGATATATGTGATAAATGTTTCGTTCAATCCGGACATTTGAATCTTCACAAACGCttacatactggagagaaaccataTCGGTGTGACGAATGCGGGAAAAGTTTTACTCGTTCATATGCattaaatattcacaaacgtatacataccggCGAGAAGCCGAATCAATGTGATATATGCAATAAATCTTTCACTCAAAGACATGCTTTGAAGATTCACAAGCGATTACattctggtgagaaaccgtaccagtgcgaCGTTTGTAGCAAAACTTTTTCCCAGTCACAACAAATTAATGAACATAGACGTACACATACCGGTGGATCCGGAAGTTTAAGATTATTGTCCAAAATTGAAGATGACATGCCAGTGAATCAGGAAGCACAAATTGGCTTTTCGAGTGTCGTCATTAAATGTGAGCAGCCAGAAATGACTGACTCTGACAATTCTAATATTGGGATTGATTCCGAGCCTGAGAAATTCAGTACAGCTAAAACTAAATCTTCTCCTCTTGAAATTGAGAGTCGTACGAAAGAAGAATTGGTTTCCAATCGAGGAGGTCCTTCAGATGCCGCCATTAAACATAAAACAGAAATGAGTTGTTCAGACAATGCGTTTTTCTTCGAAGAAGTGAAGATGAACAATGAACAATCTGGTTTTAATGTTGCAAACGCAAAATGTGACCCTTTGGCTACAGAGACAtacataaaacaagaaaatgaaGTGTACGTCAGTCCGTCGTTTTCGACATTTAGTGGTAGTGACAACAGTGATGGTGATAGACCTGTGTCAGTTAACGAAAGTCAGCCAGAGCTGGAGGTTAAACGCAAAACTCCATTTcattgtgacatttgtaataaaaatttctcCCAGCGAGGTAAATTAAAAGATCACAAACTtacacataccggtgagaaaccgtatcaatgtgatgTATGCAGTAAGAATTTTACACGTTTGAGTAATTTAAGTGatcacaagcgtatacatacagGCGAGAAACCGTATAAATGCGACGTTTGCGATAAAACTTATAACCGATCGAGCGGTTTATTTAGACACAAAAATACACATGGTAGAGTTGACCGATCTGTGTCCGTTAAAGTAAGTCAACAAGAGCGCAAAATTAAAGTCAAAACGCCatttcagtgtgacgtttgcggcAAGACTTTCATTCAACTCGGTAAATTAAGGGATCATAGACTtacacataccggtgagaaaccgtatcaatgtgataTATGCAGTAAGAATTTTACACGGTTGAGTAATTTGAGTGATCACAAACGTGTACATACAGGCGAGAAACCGTATAAATGcgatgtttgtaataaaactTACAATCGATCGAGCGGTTTGATTAGACACAAAAAtacacataccggtgagaaacagTACCGATGTGATATATGTGATAAGTGTTTTTTTCAACGCGAATCCTTGAAGGTCCACGAACGTTGTCATTCTGGAGAGAGGCCGTTTCAGTGCGATTTATGTGATAAAACTTTCATTCATTCGAGTCATTTACGTAGACACAAACTGAGACACAAGCGCGTCCAACTTGACGGTTTTGGTtga
Protein Sequence
MSNNSVQYNFMQTLHALESMTNGDEDKNKISKKSDRLTSSIEKDMSINRVGCIGQEADDDFSCVVIKHEEIDLSDSEIPNNETDVKPQIFNTVNTNKHSDLIVKIKPEPIEIESRVKQEFVFNQGTGPTDAAIKNEESETSLTDTAFSFEEAKTWNDSNEQDFNCLKANTSVKCDPLATETSIKQENEACVTSFSTFSGSDGDTDVNSGHDRSVAVSGIDSVDKIKNKPSFNCDVCNKTYIRQDRLRNHILKHTQASEKPYQCDVCSKNFSHLCNLNYHKRIHTGEKPYRCDVCNKTFSRSCSLSDHKRIHTGKKPFQCDICDKCFVQSGHLNLHKRLHTGEKPYRCDECGKSFTRSYALNIHKRIHTGEKPNQCDICNKSFTQRHALKIHKRLHSGEKPYQCDVCSKTFSQSQQINEHRRTHTGGSGSLRLLSKIEDDMPVNQEAQIGFSSVVIKCEQPEMTDSDNSNIGIDSEPEKFSTAKTKSSPLEIESRTKEELVSNRGGPSDAAIKHKTEMSCSDNAFFFEEVKMNNEQSGFNVANAKCDPLATETYIKQENEVYVSPSFSTFSGSDNSDGDRPVSVNESQPELEVKRKTPFHCDICNKNFSQRGKLKDHKLTHTGEKPYQCDVCSKNFTRLSNLSDHKRIHTGEKPYKCDVCDKTYNRSSGLFRHKNTHGRVDRSVSVKVSQQERKIKVKTPFQCDVCGKTFIQLGKLRDHRLTHTGEKPYQCDICSKNFTRLSNLSDHKRVHTGEKPYKCDVCNKTYNRSSGLIRHKNTHTGEKQYRCDICDKCFFQRESLKVHERCHSGERPFQCDLCDKTFIHSSHLRRHKLRHKRVQLDGFG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-