Xxan022930.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754475.1:20457638-20462547[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 7.2e-06 0.00015 22.6 2.3 1 23 221 243 221 243 0.99
2 18 2.5e-06 5.2e-05 24.0 4.6 1 23 249 271 249 271 0.98
3 18 5.8e-05 0.0012 19.7 1.5 1 23 277 299 277 299 0.97
4 18 4.4e-05 0.0009 20.1 2.1 1 23 305 327 305 327 0.99
5 18 1.6e-06 3.2e-05 24.6 3.1 1 23 333 355 333 355 0.98
6 18 0.0017 0.036 15.1 1.7 1 23 361 383 361 383 0.98
7 18 1.1e-05 0.00022 22.0 0.4 1 23 389 411 389 411 0.96
8 18 6.9e-05 0.0014 19.5 2.8 1 23 417 439 417 439 0.96
9 18 0.071 1.5 10.0 0.2 1 13 445 457 445 461 0.92
10 18 8.1e-05 0.0017 19.3 3.7 2 23 613 634 612 634 0.96
11 18 4.1e-05 0.00085 20.2 2.3 1 23 640 662 640 662 0.98
12 18 2.3e-05 0.00047 21.0 6.8 1 23 668 690 668 690 0.99
13 18 0.012 0.24 12.5 5.6 1 23 696 717 696 717 0.95
14 18 7.4e-05 0.0015 19.4 0.3 1 23 729 751 729 751 0.98
15 18 4.1e-06 8.4e-05 23.3 2.9 1 23 757 779 757 779 0.98
16 18 0.0004 0.0082 17.1 5.9 1 23 785 807 785 807 0.98
17 18 0.005 0.1 13.6 2.4 1 23 813 835 813 835 0.98
18 18 0.00015 0.0031 18.4 1.0 1 23 841 863 841 863 0.96

Sequence Information

Coding Sequence
ATGCGAGAAATTGTAATACTCAGTGGAGATCTAAGTAAAATGTGTCGAGTATGTCTTACGAGAGATACGACTTTAACAGATATATTCTCGCACTCGTCTAAATTCGGAACACAAATAATAGATATGGTTATAAAGTGCACTTCCGTGAACatATCGAGGAACGACAATTTACCAAAATTCATCTGTAAATTGTGTTACAAAGAACTTGAACGAGTCCATAGGTTTCAAGACAAGGCGCTTCAGTCCGAAAGaattttatacaactatttacaaAGTCTGCATCCCGGGTGTTCAGACGATTgcgagaaaatattgaaacaagaTTCAGAAGAAAACATTTCGATAAAACAAGATAGCATCGACGATAACAGTAACATCAGTTGGGTAGACACAAAAGTCGACATTAACGACACTGAAGTGGTGCCAACTGCAGATAAAGAAAAGTCCGTTGTGAACACAAACTTCACGGTGAAGTGTGAATTTTCGGAAACGCTGGACGAAACTTGTATCGAAGACACTTTCGATATTAAACAAAAGAGCGTCAAACAAGAGAATTACGATGAAGCTGTCGCAGTTAAACCTATTACcgccaataaaaacaaaaggaaACTTTCAAAGAATAAAACGGCGAAACAAAAACGCGTTTTTAATACTGATTCGTTCCAGTGTGAAATTTGCAACAAGTACTTTACACACCCTAGCAATGTCAAAGCACATAAACGTATTCATACAGGTGAGAAACCCTTTCAATGTGACGTTTGCGGCAAATGTTTCGGCAGACCAGatcatttgaaaaaacataaacGATTGCATACCGGCGAGAAGCCGCATCAGTGTGACGTCTGCAACAAAACCTTTGGCAGAGCAGACTATCTGAAACTGCATCTGACAATGCATACgggtaaaaaaatttataaatgtgaCATTTGCCCCAAAAGCTTTCACATACCGAGTTATTTAAAAACGCACAAACGTGTCCATACCTTTCAGGAAAGGTACACGTGTCCTTACTGCAATAAAACGTGTTCACAAATATACAACTTAAGGAGACATATGTTGGtgcatactggagagaaaccgtaccaatgtGACGTTTGCAGTGAATTCTTCATACAGATGACGCAATTGAAAACGCACAAAATGAaacatactggcgagaaaccgTTCCAATGTAACGTGTGCGGCAAAGGTTTTACCACGACGGCCAGTTTGAATAGACACAAAGTTGTgcatactggcgagaaaccgTTTCAATGCGATGTCTGCGATAAGAGTTATACTCAGATGGAGCATCTCAAAAGACATAAAGTTTCACAtaccggagagaaaccgtacagATGCGACATTTGCAACAAGTCTTATACGCAGTCGATCGGAATAAGACACGAAAAACTACCAAATGTCATCTGCAAATTGTGTTACGTCGAACTGGACCGCGTTCAGTTCTTTCTAAACAAAGCACTACAGTCGGAAAAAGCACTGCAAAACTATTTACAACAATTAGACCCCGGATACGAAAGTCCAAAAGACAGCACCTCCGTAAAAAACGACAGCATCGACGATGACGACACAAACAGGAGTTGGGATGAAACAAGCGTCGATCAGGACGCTGCGCCGGCGCCAACTTCAACCAAAGAAAGCGCCAATTTCAATTCAAGCCTCATACTAAAATGCGAATACCCCGAACAATTGGTGAAAACACATTTCGAAGAAACGTTCAACAATCTTCCTCTAAGTGCTGTAAAACAAGAGACAGTCGACACGACAAGTTCAGCGCCATCTACCGGTGACGGCAGTACTACTTTCAATAAAAcatcaaaagagaaaaaaatattacactgCGAAATATGCAACAAGATCTTCACGCAAGCTAAGCATTTGAAAGTACACAAACGAATTCATACCGGCGCAAAACCGTTCCAGTGCGACGCTTGCGGCAAGTGTTTTGGTCGAGAAGATAATTTGCGAACGCATAAACGTCTACATACCGGCGTGAAACCTTTTAAATGCACCATTTGCAGTAAGTGTTTCAGCAGAGAAGATCACGTCAGAACCCATATGCGAAGTCACACCGGTAAGAGAccttaccagtgtgacgtttgcggcAAATGCTTCACGCAATGCGGTTTGAAGACGCACAAACTGCTACACGAAGGAGAAAAATTGGATAAAACGATTAAGCCgtacaagtgtgacgtttgcaacaagaGTTTCGCTAAACCAATAGGATTGAAGACCCATAAACTGATTCATTCACCCGAGAAACGGTACCGATGTTCTTACTGCAATAAAGGGTATTCGCAGACTTCCAACTTGAAGAAACACATGTTtatacacactggtgagaaaccgtaccgatgtgacgtttgcaacgAGTGCTTCACGCAAATATCGCATCTGAAAACACACAAACTCAAACACACTGGGGAGAAACCGTTTCGGTGCGACGTGTGCTATAAAGGTTTCACGTCCGCGTGCGTTTTAAAAAGACACAAACTGGTACACGCCGACAAGAACCAAtttcagtgtgacctttgtgaTAAAAGTTATTCTCAGTTGGTTCATTTGACAGTACATAAAGGAGTTCATACAGGGGAGAATTCGTTTCAGTGA
Protein Sequence
MREIVILSGDLSKMCRVCLTRDTTLTDIFSHSSKFGTQIIDMVIKCTSVNISRNDNLPKFICKLCYKELERVHRFQDKALQSERILYNYLQSLHPGCSDDCEKILKQDSEENISIKQDSIDDNSNISWVDTKVDINDTEVVPTADKEKSVVNTNFTVKCEFSETLDETCIEDTFDIKQKSVKQENYDEAVAVKPITANKNKRKLSKNKTAKQKRVFNTDSFQCEICNKYFTHPSNVKAHKRIHTGEKPFQCDVCGKCFGRPDHLKKHKRLHTGEKPHQCDVCNKTFGRADYLKLHLTMHTGKKIYKCDICPKSFHIPSYLKTHKRVHTFQERYTCPYCNKTCSQIYNLRRHMLVHTGEKPYQCDVCSEFFIQMTQLKTHKMKHTGEKPFQCNVCGKGFTTTASLNRHKVVHTGEKPFQCDVCDKSYTQMEHLKRHKVSHTGEKPYRCDICNKSYTQSIGIRHEKLPNVICKLCYVELDRVQFFLNKALQSEKALQNYLQQLDPGYESPKDSTSVKNDSIDDDDTNRSWDETSVDQDAAPAPTSTKESANFNSSLILKCEYPEQLVKTHFEETFNNLPLSAVKQETVDTTSSAPSTGDGSTTFNKTSKEKKILHCEICNKIFTQAKHLKVHKRIHTGAKPFQCDACGKCFGREDNLRTHKRLHTGVKPFKCTICSKCFSREDHVRTHMRSHTGKRPYQCDVCGKCFTQCGLKTHKLLHEGEKLDKTIKPYKCDVCNKSFAKPIGLKTHKLIHSPEKRYRCSYCNKGYSQTSNLKKHMFIHTGEKPYRCDVCNECFTQISHLKTHKLKHTGEKPFRCDVCYKGFTSACVLKRHKLVHADKNQFQCDLCDKSYSQLVHLTVHKGVHTGENSFQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-