Xxan023038.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754475.1:21457246-21459333[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.0012 0.024 15.6 4.0 1 23 6 28 6 28 0.98
2 18 0.00029 0.0059 17.5 3.6 1 23 34 56 34 56 0.98
3 18 2.8e-06 5.8e-05 23.8 3.5 1 23 62 84 62 84 0.98
4 18 0.00017 0.0035 18.2 5.8 1 23 90 112 90 112 0.96
5 18 0.00036 0.0075 17.2 4.9 1 23 118 140 118 140 0.98
6 18 0.0034 0.069 14.1 3.1 1 23 146 168 146 168 0.97
7 18 0.00011 0.0022 18.8 4.4 1 23 174 196 174 196 0.97
8 18 0.068 1.4 10.1 5.1 1 23 202 224 202 224 0.97
9 18 3.7e-05 0.00075 20.3 0.5 1 23 311 333 311 333 0.97
10 18 1.2e-05 0.00025 21.9 3.4 1 23 441 463 441 463 0.99
11 18 1.7e-07 3.6e-06 27.6 0.3 1 23 469 491 469 491 0.99
12 18 0.0002 0.0041 18.0 6.1 1 23 497 519 497 519 0.97
13 18 0.00056 0.012 16.6 5.2 1 23 525 547 525 547 0.98
14 18 0.0005 0.01 16.8 4.1 1 23 553 575 553 575 0.97
15 18 1.4e-05 0.00029 21.6 4.6 1 23 581 603 581 603 0.97
16 18 7.8e-05 0.0016 19.3 1.6 1 23 609 631 609 631 0.96
17 18 3.4e-05 0.00069 20.4 2.9 1 23 637 659 637 659 0.97
18 18 3e-05 0.00062 20.6 0.8 1 23 665 688 665 688 0.97

Sequence Information

Coding Sequence
ATGGCTGACAAACCGTTTGAGTGTAGTGCTTGTAGAATGTGTTTCAGACATTTAGATGATTTGAATGCCCACAcacgtacacatactggtgagaaaccgtacaagtgtgacgtttgcagtaAGTGTTACATCTTTTCGAGTTTATTAAAaagacacaaactgatacataccgGGGAAAAACTACATCAGTGCGACGTATGCGGTAAATGTTTCAGTCAGTTAGTGAACTTAAAAGTCCATAAACGCGTGCATACAGGCGAGAAACCGCACatttgtgacgtttgtaataaaagttttactcatttaagtacattaaaaaatcataaacaacGTCACAACATAGAGAAACTGTACCAGTGTGATGTTTGCAGCAAGTGTTTTGCACGACTGAGTTGTTTAACGACTCATAAACTGATTCATTACGGCGAGAAGTTgcataagtgtgacgtttgtaataagtcttTTTTAAAGCCGACCACTTTAAAAAGACACAAATTAGTCCATACTGGCGAAaaaccatacaagtgtgacgtttgcaacaaatGTTATACGCGCTCTACCAGTTTGAACAATCACAAACTTCTACATACCGAGGACAAACTTTATCACTGCAATAATTGTAAGTGTAGTTTCATGCGATTAGCCGAATTAAACAGTCATAAATCTATACACACTGACGAACAACTTTATATAAATCAAGAAGTAGCAGACACCAGTTTTAAACATCCAACAAATGAACGCCaagataatgaaacaaacaaTAGTTCGTTCAGAAAATGTAGAAATTTCAATACCGATATGAAGTTAGATACGGATTCTGATGATCTTGATCAGATAGACGGCCGAAAAAATCGAGACGGTTTGTTGagcgttttaaaaactaaattcaaCGTTTTAAACAATCATATCCAATCGAAGACTTTAAAACGGCATATATGTGACGTTTGTGAAAAAGGTTTTCGCCAAATAAGTAATTTAGTTAAACATAAACGCATTCATACCGGTGAAAACCCGTGTCAGAGTGACGTTGGCAACTTAAAATCACATAAGCTGGTTGATTTTAAAGAACAACTCCATATAAAACAAAACTCGACAGGCGACGCCTTAAACGCACGCCACGACGACGAATTAACTGTTGAAAGAACGGCTAGTTCACGTGAAGACGTGAAGTTATATACAGATTCCGCATCTTCAAATGATTCCACTTTAATACATATAAATGATCACTTTATGTCTAAACAAAGCAGCGATGATAAAAGAAAAGTgtcaaaaaaacttgagtatGAAAATCGACATAAAACAGATCAATCGGTAGATCTTTATAGGTGTGACATTTGCAATAAATGTTATGCATATTCGAGCGCTTTAAAGAGACACAAATtaacacatactggtgagaaactcTATCAGTGTGACGTGTGTGGGAAAAGTTTCAGTCAagcgataaatttaaaaatacacaaacGTGTACATACAGGCGAAAAACCGCACAGATGTGACGTGTGCAATAAAAGTTTTACTCACTTGAGTACGTTGAAAAACCACAAACAACTCCACAGCGGGGCGAAACTCTATCAGTGCGATGTTTGCAGCAAGTGTTTCACGCGAATGAGTtgtttaaatattcataaactTATTCATACCGACGATAAGCCACATAAGTGTGACGTGTGTAATAaacgttttattaattttacaactTTAAAAAGGCATAAGTTAGtgcatactggagagaaaccgtatcggtgtgacatttgtaacaaGTGTTTTACGCGATCGACTAGTTTGAATAATCATAAAATGTTGCATACGGGCGAGAAACCTTATCgctgtgacgtttgcaataaggacttttcaaatcaaaattatttaaaaacgcaCGAATTACAACACAGTGAAataaaaccgtatcagtgtgaagtTTGCAGCAGAAGTTTTACACGGTTGGCTCATTTAAATAGACATAAGTTTGTTCATGCAGATGAGAAACCTTACCGGTGTGACGTGTGCAACAAAGGTTTCATACAATTACAGAATTTAAAAGCACATAAAAAGGTTAAACACAAAGAAGTGAAATCTAAGAAATGa
Protein Sequence
MADKPFECSACRMCFRHLDDLNAHTRTHTGEKPYKCDVCSKCYIFSSLLKRHKLIHTGEKLHQCDVCGKCFSQLVNLKVHKRVHTGEKPHICDVCNKSFTHLSTLKNHKQRHNIEKLYQCDVCSKCFARLSCLTTHKLIHYGEKLHKCDVCNKSFLKPTTLKRHKLVHTGEKPYKCDVCNKCYTRSTSLNNHKLLHTEDKLYHCNNCKCSFMRLAELNSHKSIHTDEQLYINQEVADTSFKHPTNERQDNETNNSSFRKCRNFNTDMKLDTDSDDLDQIDGRKNRDGLLSVLKTKFNVLNNHIQSKTLKRHICDVCEKGFRQISNLVKHKRIHTGENPCQSDVGNLKSHKLVDFKEQLHIKQNSTGDALNARHDDELTVERTASSREDVKLYTDSASSNDSTLIHINDHFMSKQSSDDKRKVSKKLEYENRHKTDQSVDLYRCDICNKCYAYSSALKRHKLTHTGEKLYQCDVCGKSFSQAINLKIHKRVHTGEKPHRCDVCNKSFTHLSTLKNHKQLHSGAKLYQCDVCSKCFTRMSCLNIHKLIHTDDKPHKCDVCNKRFINFTTLKRHKLVHTGEKPYRCDICNKCFTRSTSLNNHKMLHTGEKPYRCDVCNKDFSNQNYLKTHELQHSEIKPYQCEVCSRSFTRLAHLNRHKFVHADEKPYRCDVCNKGFIQLQNLKAHKKVKHKEVKSKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-