Xxan011031.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754469.1:9811921-9817277[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.16 3.2 8.9 1.3 1 23 49 71 49 71 0.97 2 20 8.8e-05 0.0018 19.1 2.7 1 23 77 99 77 99 0.98 3 20 0.0012 0.025 15.5 0.6 1 23 106 128 106 128 0.97 4 20 0.00017 0.0035 18.2 1.4 1 23 135 157 135 157 0.99 5 20 0.012 0.25 12.4 3.2 1 23 163 186 163 186 0.94 6 20 2.6e-05 0.00053 20.8 1.5 1 23 191 213 191 213 0.96 7 20 0.0014 0.028 15.4 2.9 1 23 221 243 221 243 0.98 8 20 0.00021 0.0044 17.9 0.1 1 23 246 268 246 268 0.97 9 20 7.4e-06 0.00015 22.5 0.3 2 23 275 296 274 296 0.97 10 20 9.9e-07 2e-05 25.3 1.4 1 22 302 323 302 323 0.97 11 20 0.0012 0.025 15.5 2.0 2 23 402 423 401 423 0.97 12 20 0.04 0.83 10.8 1.6 1 21 427 447 427 450 0.89 13 20 0.00026 0.0054 17.6 3.7 2 21 457 476 456 477 0.94 14 20 0.019 0.39 11.8 3.0 1 23 484 507 484 507 0.92 15 20 4e-05 0.00082 20.2 0.7 1 23 512 534 512 534 0.96 16 20 0.00018 0.0037 18.2 2.7 2 23 544 565 543 565 0.96 17 20 6.1e-06 0.00012 22.8 1.4 1 23 568 590 568 590 0.98 18 20 7.9e-06 0.00016 22.4 0.9 1 23 596 618 596 618 0.98 19 20 5.8e-06 0.00012 22.8 1.6 1 23 624 646 624 646 0.98 20 20 0.0034 0.069 14.1 1.9 1 23 652 675 652 675 0.97
Sequence Information
- Coding Sequence
- ATGGCTTATGAAATAAGTGTCTCCAATTACAGGATAAACGCCGGAAATGCAAAACGGGAAATGCAAACTTCGAAAAAGCGAGCGCAAACAATGAAATGTATTGAAGACGAAGTGAGTGAGGGCTATATCAAGACAGAAGATGGATTTCGTTGCGAGTCgtgcaataaattatttgtaataaaaaccgCCTGGAAAAAACACTACTTCGTTCATTTGAAAGAAAGGCCGTATAGGTGCGACCGGTGCGACAAATCTTACAAGCGTCCCTCGCAGTTGAAGTTTCATCAAAAGGTGCACACGGAAAGACACCGACCTTTTGTGTGCGATCTGTGCAACAAAATGTTTAGAACCATGTGGGAAGTCAGAAAACACAAAGAAATACACAACCCTCAAAGGAAACTGTACACTTGTGAAATATGTAATAAAGATTGTGCGTCGCAAGCGTCGCTCGAAGATCATCGCAAAAGACATCTGAAGAAATACGATCATAAATGTCAACATTGCGATAGGGGATTTGTTTTGAAACGCGAGCTCCGATATCATGTCGATTCCGAACACAAAGCCGTACGCTACAAATGCGATACCTGCGGAAAAATGTTCAGAAGCATGACTAATTTGAACACTCATAAAATTTTACACAATCCGATTTATAAACCGGAGTTCACGTGCAAAATCTGTGGTAAAATGTGGCATTCGCGGAGTTATTTGAAGAGACATTTGAAAGCTCACGAAGGGTTTGCTTGCGACGTGTGCGGTAAAATATTGTCGTCGAAATCCAGCTTAGACAATCATCTCTTGTCCCATAAAGGAGAGAAACCTCTGAGCTGTGAAGTTTGTGGTAAAAGTTTCATGCGAGGAAGTACGCTTCAAGTTCATCTAAGAACACATACGGGCGCcaaaccttatcagtgtaaaGATTGTGGAAAATGTTTCACGCAGCGGAGCCCCTTAGTTATCCATATGAGACGCTACGGTATTGCAGTGAAAGAAGAAAAACCAAAcggatctgatttaaatttgaaaggagaaaaaagtgattttataaaagaTTCCGTCGACAAAGCAATTAAGTCACCGACAAAGCgtacaaataaaaatagtgcagacggaaaattgaaaaaacatcgcGCAAACAACACTTCGTTAAAAACAAACGATATAAACGTTCAAAATTGTTCGAATAGACTTGCGGACGCAAGCATACAGTGCAAGGAGTGCAAGATGGTATTCAAAACGGAAAATATGTTTCTCACTCACTACCGCAAACACTCGAAACCGTTCAAATGCGACGTCTGCACAAAATGTTTTGCGTCCGGTTGGGAAATGAGATCGCACAAAGCTTTCGttcacgaaaaaaaatacagtgtacAATGCGACCATTGCGACAAAACGTTCAGTTCGAAACAGTATTTAAAATTGCATCACAAGAAAATATTGAACATACGTTCGTTTTCCTGTACGTACTGCGACAAAAAGTTTTTCCTCAAGAAAAAACTCGAACTGCACGTCGACTACCGACACAAAGGAATCACGTACGACTGCGACGTTTGCTCGAAAGGATTCAGCTCGCCGCACAACTTGAAAGTTCACAAGGAAGTGCACGATCCGAATTACAGTCCTGAAAAGCTCAAGTGTCACATTTGCGATAAGATATGCGTTACTCGCGGCGCTCTGCGGAAACATTTGAAGGGCCACGAAGGCTTTACGTGCCACGTGTGCGGGAAGGTGTTGACTACAAACACGAGTCTGCAAAAACATTTACTGATCCATTCGGGCGAGAAGCCGTTCTCGTGCGACGTTTGCGGTAAAAGTTTTGGGAAGAAACAGGTTCTCAGACTGCACATGCGCACTCACACGGGAGCCAGGCCGTACCAGTGCCTCGTTTGCGGGAAATGTTTCACGCAACGAAGTCCGATGACGATTCACATGAGAggacatacaggagagaaaccgtacaagTGTAGATTGTGTTCTGATGCGTTCGTCAGTAAATCATTGCTTAACAATCATATGCATCGTGTGCATCAAGTTTAA
- Protein Sequence
- MAYEISVSNYRINAGNAKREMQTSKKRAQTMKCIEDEVSEGYIKTEDGFRCESCNKLFVIKTAWKKHYFVHLKERPYRCDRCDKSYKRPSQLKFHQKVHTERHRPFVCDLCNKMFRTMWEVRKHKEIHNPQRKLYTCEICNKDCASQASLEDHRKRHLKKYDHKCQHCDRGFVLKRELRYHVDSEHKAVRYKCDTCGKMFRSMTNLNTHKILHNPIYKPEFTCKICGKMWHSRSYLKRHLKAHEGFACDVCGKILSSKSSLDNHLLSHKGEKPLSCEVCGKSFMRGSTLQVHLRTHTGAKPYQCKDCGKCFTQRSPLVIHMRRYGIAVKEEKPNGSDLNLKGEKSDFIKDSVDKAIKSPTKRTNKNSADGKLKKHRANNTSLKTNDINVQNCSNRLADASIQCKECKMVFKTENMFLTHYRKHSKPFKCDVCTKCFASGWEMRSHKAFVHEKKYSVQCDHCDKTFSSKQYLKLHHKKILNIRSFSCTYCDKKFFLKKKLELHVDYRHKGITYDCDVCSKGFSSPHNLKVHKEVHDPNYSPEKLKCHICDKICVTRGALRKHLKGHEGFTCHVCGKVLTTNTSLQKHLLIHSGEKPFSCDVCGKSFGKKQVLRLHMRTHTGARPYQCLVCGKCFTQRSPMTIHMRGHTGEKPYKCRLCSDAFVSKSLLNNHMHRVHQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01511036;
- 90% Identity
- iTF_01511036;
- 80% Identity
- -