Xxan022753.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754475.1:19002426-19004869[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00032 0.0065 17.4 2.2 2 23 228 249 227 249 0.97
2 16 1.2e-05 0.00024 21.9 3.8 2 23 256 277 255 277 0.97
3 16 1.8e-05 0.00037 21.3 1.3 1 23 283 305 283 305 0.98
4 16 2.3e-06 4.6e-05 24.1 0.6 1 23 311 333 311 333 0.99
5 16 2.3e-06 4.8e-05 24.1 2.1 1 23 339 361 339 361 0.99
6 16 1.6e-05 0.00034 21.4 4.2 1 23 367 389 367 389 0.99
7 16 4.2e-07 8.5e-06 26.5 3.3 1 23 395 417 395 417 0.99
8 16 0.00029 0.0059 17.5 3.1 1 23 423 445 423 445 0.96
9 16 7.8e-07 1.6e-05 25.6 4.0 1 23 451 473 451 473 0.99
10 16 0.00018 0.0037 18.2 1.2 1 23 479 501 479 501 0.99
11 16 6.8e-06 0.00014 22.6 2.3 1 23 507 530 507 530 0.97
12 16 2.6 54 5.1 0.1 5 17 540 552 539 553 0.91
13 16 2e-05 0.0004 21.2 3.5 1 23 564 586 564 586 0.99
14 16 9.9e-07 2e-05 25.3 2.0 1 23 592 614 592 614 0.99
15 16 0.00017 0.0035 18.2 1.7 1 23 620 642 620 642 0.99
16 16 7.2e-07 1.5e-05 25.7 1.5 1 23 648 670 648 670 0.99

Sequence Information

Coding Sequence
ATGGAAAACCTATCGATACGTGAAAGAATTGTTAGTGGAATTTGTCGTTTGTGTTTATCTAACGACGGAGCACTAATTGATATGTTCTCGTTTTCATCGGAACTCGAAAGTCATATCGTAGATGCTGTCATGGAATGTACTTCCATTCATgtagaaaaaaatagtgaattgCCTAAAACTATATGTGAGTCTTGTTACACGCAACTCGTCAAAACTCAGAATTTTCAAAGACAAGCTCTTCAATCTGATCAAACGCTGCAAGGGTATTTGAAACAATTGCGAGATACCGATAAGCAGAACATACTTGGAAGCTCAGTAATTAGCGGGAAACATCTTATTGAAACTATCGTTGCTGAACAAGTCAACGAAGATAACAGTACCGACCGTGAAGAAATAAAGCCTGAAGTTAAATATTTCGAACGCGGCTATGAAGAATTTGAAATGGATATTGTTGAACAGAATGTTGTTCCGTTCGAGACTAAGACACACGCGGATTGGGATGTTCATAAATCTGAGAAAGATTCGACATTTAATCCTAATCTAATAGTAAAGTCCGAACCAATTATAAATGATAGTGAACGGTTTGACATTGATACCGCAGTCTTAAATGATTTCTTACCAAATCAGAAGATTATAAAATCAGAGAACGAAGTTTCCAATGATAACGTCATAACTTCTAATCAGTGTGACGTCTGTAAAAATTGTTTCAGCAATTCAGATTTATTGAGAGAACACCAGCGCGCACATGCTGACGAAAAGAGATCTCAGTGTAACGTGTGTAATAAAAGTTTTAAGAGCTCTGGTAATTTGAAGTTACACCAATGCTCTCATACTGGAGAAAacccatatcagtgtgacgtttgtaaaaaaagtttcagtcgACCAAGTATTTTGACAACACACCGGCGattacatactggtgagaagccatttCAGTGTTACGTTTGCAATAAGAGTTTCAGCGAACCGGTTGGTTTGAGAAGACACCAACGcgtacatactggagagaaaccgtatcaatgtgactTTTGCAATATGAGTTTTAAGAGCTCTGGTAATTTGAAGTTACACCAACGTTCTCATACTGGTGAGAGGCCGTATCAGTGTAACGTTTGTAATACGAGTTTCAACCGCTCAGAAAGTTTGAAATTGCACCATCGcagacatactggtgagaagccgtatcagtgtgacgtttgtaacaagtgtTTTAGTCAACCGGGTAATTTGGTAAGACACCaccgtatacatactggtgagaagccatatcagtgtgatttttgtaataagagttttagCGAACCGGTTGGTTTGAAAAGACACCGACATTTCCATACTGGTGAGAacccatatcagtgtgacgtttgtaacaagtgtTTTAGTCATCTGGGTAATTTGGTAAGACACCAgcgaatacatactggtgagaagccatatcagtgtgatgtttgtaataagagtttcagcgAAGCGGTTATTTTGAAAAGACATCATcgtgtacatactggtgagaagccatatcagtgtgacatttgtaacaaGTGTTTCATTGACGTAAGTACTTTGAGAAGACACAAACGACTTGTACACACTGGTGTGAAACCGTATCAATTTGACTTCTGCAATATGAGTTTCAGCACATCAGGTAATTTGAAATTACAACAGCCTtctcatactggtgagaagccgtatcagtgtgacgtttgtaacaagtgCTTTAGTCATCCGGCTATTTTAAGAAGACATCAGcgtgtacatactggtgagaagccatatcagtgtgacgtttgtaacaagtgtTTTAGTCAGCCAGGTACTTTGGGAAGACATCAGCGTTCTCATACTAGTGAGAAACCATataaatgtgacgtttgtaacaagtATTTTAGTCATCCGTCTATTTTGGGAAGACATCAGcgtgtacatactggtgagaagccatatcagtgtgacgtttgtaacaagtgtTTTAGTCAGCCAGGTACTTTGGGAAGACATCAGCGtgttcatactggtgagaaaccgcaataa
Protein Sequence
MENLSIRERIVSGICRLCLSNDGALIDMFSFSSELESHIVDAVMECTSIHVEKNSELPKTICESCYTQLVKTQNFQRQALQSDQTLQGYLKQLRDTDKQNILGSSVISGKHLIETIVAEQVNEDNSTDREEIKPEVKYFERGYEEFEMDIVEQNVVPFETKTHADWDVHKSEKDSTFNPNLIVKSEPIINDSERFDIDTAVLNDFLPNQKIIKSENEVSNDNVITSNQCDVCKNCFSNSDLLREHQRAHADEKRSQCNVCNKSFKSSGNLKLHQCSHTGENPYQCDVCKKSFSRPSILTTHRRLHTGEKPFQCYVCNKSFSEPVGLRRHQRVHTGEKPYQCDFCNMSFKSSGNLKLHQRSHTGERPYQCNVCNTSFNRSESLKLHHRRHTGEKPYQCDVCNKCFSQPGNLVRHHRIHTGEKPYQCDFCNKSFSEPVGLKRHRHFHTGENPYQCDVCNKCFSHLGNLVRHQRIHTGEKPYQCDVCNKSFSEAVILKRHHRVHTGEKPYQCDICNKCFIDVSTLRRHKRLVHTGVKPYQFDFCNMSFSTSGNLKLQQPSHTGEKPYQCDVCNKCFSHPAILRRHQRVHTGEKPYQCDVCNKCFSQPGTLGRHQRSHTSEKPYKCDVCNKYFSHPSILGRHQRVHTGEKPYQCDVCNKCFSQPGTLGRHQRVHTGEKPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-