Xxan022485.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754475.1:16296608-16300796[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 5.4e-05 0.0011 19.8 4.7 1 22 261 282 261 282 0.96
2 19 0.022 0.45 11.6 0.4 2 23 290 311 289 311 0.97
3 19 8.2e-06 0.00017 22.4 6.6 1 23 317 339 317 339 0.99
4 19 1.3e-06 2.7e-05 24.9 3.5 1 23 345 367 345 367 0.99
5 19 2.8e-05 0.00058 20.7 3.4 1 23 373 395 373 395 0.98
6 19 0.00077 0.016 16.2 1.9 1 21 516 536 516 537 0.94
7 19 0.0021 0.043 14.8 1.4 1 23 544 566 544 566 0.98
8 19 0.00016 0.0032 18.3 4.6 1 23 572 594 572 594 0.99
9 19 3.3e-05 0.00068 20.5 5.9 1 23 600 622 600 622 0.98
10 19 5.8e-05 0.0012 19.7 2.7 1 23 628 650 628 650 0.99
11 19 0.00072 0.015 16.3 5.1 1 23 656 678 656 678 0.98
12 19 1.2e-05 0.00024 21.9 1.8 1 23 684 706 684 706 0.99
13 19 0.0019 0.039 14.9 3.2 1 23 712 734 712 734 0.98
14 19 0.0033 0.068 14.2 6.7 1 23 740 762 740 762 0.98
15 19 9e-07 1.9e-05 25.4 2.1 1 23 814 836 814 836 0.99
16 19 5.5e-05 0.0011 19.8 1.6 1 23 842 864 842 864 0.99
17 19 2.2e-05 0.00044 21.1 4.0 1 23 870 892 870 892 0.99
18 19 2.7e-06 5.6e-05 23.9 1.2 1 23 898 920 898 920 0.99
19 19 3.7e-05 0.00075 20.3 4.1 1 23 926 948 926 948 0.98

Sequence Information

Coding Sequence
atgaaagaaatatcaATAACTGGCCGTGGCCTCACaacaatgtgtcgattgtgtTTATCAAGAGGGGTAGCGATGCTCGATGTGTTTCGATTTTCTACCAGATTTGAAGACAAAGTCGTTGATGTGATAATGAAGTGTGCTCCTGTACAGGTACTGAGATACGATGAGATGCCGAAATTCGTATGTCGATTATGTCTTACTCAACTGGAGAAAATGCGTCAGTTCCAAATGCAAATAATACAGTCTGACAAAACACTACGACGCTATTTACAGCAACTGCATGCTTCTGACAAAGAACCTCTGATCGAGGCTTCTATTCAAAGTTCTAATGATTCTTTAATCGTTAATACTAATGCAGACATCAAGTATGATTCTTCAGAACTTCATGACGTGTTTGACTTGAATGTCAATTGGAGAGAAAAAGAATGTGAGAATTTTAATTCGGAAAGCAAAAATAACGAcgaaatgtctttaaaatacGAAATAAAAGTAGAACAAATAGACGAGAGTGCAATAACTCTACCAGACTGTGCTGATGATCCCTTAGAAATTTTGTCTAAAGGTGATGAGTTCAATGATATCAATATTGGCGAGAGGAAGATGGAAACAACTTTGACTATTAACTCAACATGcaaaaacattgaaattaaaCCCGAAATCAAAAACGAACCGATAGATGATGAATTGTTAATAAATACAGAAAATGTTTCATCTAACAATTATGACAGTGAAATCAACAATGAAAACATGAATTTTGATATTGACCACATTTCGGGAAACTATTCCTGTAACacttgtaataagtgtttcgttAATTCAGATGATCTTAAAAACCATATGTGTACTGACACTGGAGAGAAAATGATTCAATGTGAGATTTGTAATAGGTTTATCTCCGGCTatgaaaatttcattaaacataaacgtatacataccgacgcaaaaccatatcagtgtgacatttgtgataAGTGTTTCGCCCAGAAGGCTCATTTAGTTCATCACAAACGTACCCATACTGGGgaaaaaccatatcaatgtaaCCTGTGTAAAAAGAGTTTCGCTACAAATTCGAATTTAAGATACCACAAACGTACACATTCTGGTGAGAAGCCGTATCAATGTGACTTTTGTGATAAATGTTTCACACAAGCATCTGGATTAAGTAAACACAAACTTTCCCATGCTGTAGAAAAACCAAATGAATATTCAGCTATCAATGTTGGCGAGTGTAAAGCGGAAGCACCTGCCAATTTTGAATCGGAAACCAAAACTATTGaggaaatatatttaaaatccgaaatcaaagacTCGTCGATATATGATAATGAATCATTAATTCAAACAGAATCTATTGTGGACACACAAATTACTAGATTGAACGATTGTGgtagtgaaataaaaaatgatgacATATATATTGATTTTCACCGTACTTCGGGGAACTCCGCGTGCGTTCGTTCTACCTGTATAGAACACAGTAATGAGAATTGTGAAGACAATGAAACTCCGGTAACTTTATCACAATCATTAGCCAAACAATCGTTCTCTTGTAAAATTTGTgacaaatattttgttaattcaaATGACTTGAAAAGTCATGTGTGTTCCGATACCGGAGAGAAACCATTTCAATGTGAAATATGTAATAACTTTTTCGCCGTTTATGAACACTTAATTAATCATAAACGAATACATACCAACGGtaaaccgtatcagtgtaacATATGTAATAAGTGTTTGTCGTCGTCTTCCACTTTATATAAACACAAACTCACGCATACTGGAGAAAAATCacatcaatgtgacatttgtaataagtgcttCACTTTTGctgatagtttgaaaaaacacaaacgcgtacatacaggagagaaaccataccaaTGTGACATTTGCAATAAGTGTTTCGCTCTTACTGGCAGTTTGAGAAAACACAAACGtgtacatacaggagagaaaccatataactgtgacatttgtaataagtgtttcgccCTTTCTGGTTGTTTGAAAAAACACAAACGtgtacatactggagagaaaccatatcaatgtgacatttgtaataagtgtttcgctATTGctgatagtttgaaaaaacacaaacgtgtacatacaggagagaaaccatatcaatgtgacatttgtagtAAGTGCTTCGCTCTTCCTGATAGTTGGAGAAAACACAAACATGTACATACAGGAgaaaaaccatatcaatgtgacacgTGTATGAAGTGTTTTGCTCATTCATCTCAATTAAGAAAACACAAACTTTCCCATACTGGAGAAAAACGAATTGAACATTCAGATATCGATGTTGGCGAGAGTAAAGTGGAAGCACCTGCCAATTTTAACTTGGAAACTAAGTGTTCATTAAAATCGGAAATAAAAAACACAGTAAGATATAATAATACGCAAACTGGGGAAAacccatatcaatgtgacatttgtaataagtgtttcgctCGTGCTGATAGTTGGAAAAAACACCAACGcgtacatacaggagagaaaccataccaaTGTGACATGTGTATTAAGTCTTTCTCTCAGTCAAACGATTTAATTAAACACAAACGTACACATTCTGTTGAGAAGCCGTATCGGTGTGACATGTGTGATAGATGTTTCACACAACTAGGAAATTTAGATCGTCACAAACGTAGACATACCGGAGACAGACGTTATCAATGCCGCATTTGTAATAAAAGTTTCATTGAGTCATATAGCTTGAAAGTTCATATGCGTctacatactggagagaaaccgtaccaatgtgacgtttgtgatAAATGTTTCACACATGCAGCTAGCTTAAGTAAACACAAACTTTCCCATGCTGGAGAAAAACCAAATGAATATTCAGATATCGATGTTGGCGAGACTAAAGTGGAACCACCTGCCAATTTTGAACTGGAAACCAAAAGTATTGATGAAACAAATTTGAAAGTCGAAGTCAAAGACACGCCGATATATGAtgattaa
Protein Sequence
MKEISITGRGLTTMCRLCLSRGVAMLDVFRFSTRFEDKVVDVIMKCAPVQVLRYDEMPKFVCRLCLTQLEKMRQFQMQIIQSDKTLRRYLQQLHASDKEPLIEASIQSSNDSLIVNTNADIKYDSSELHDVFDLNVNWREKECENFNSESKNNDEMSLKYEIKVEQIDESAITLPDCADDPLEILSKGDEFNDINIGERKMETTLTINSTCKNIEIKPEIKNEPIDDELLINTENVSSNNYDSEINNENMNFDIDHISGNYSCNTCNKCFVNSDDLKNHMCTDTGEKMIQCEICNRFISGYENFIKHKRIHTDAKPYQCDICDKCFAQKAHLVHHKRTHTGEKPYQCNLCKKSFATNSNLRYHKRTHSGEKPYQCDFCDKCFTQASGLSKHKLSHAVEKPNEYSAINVGECKAEAPANFESETKTIEEIYLKSEIKDSSIYDNESLIQTESIVDTQITRLNDCGSEIKNDDIYIDFHRTSGNSACVRSTCIEHSNENCEDNETPVTLSQSLAKQSFSCKICDKYFVNSNDLKSHVCSDTGEKPFQCEICNNFFAVYEHLINHKRIHTNGKPYQCNICNKCLSSSSTLYKHKLTHTGEKSHQCDICNKCFTFADSLKKHKRVHTGEKPYQCDICNKCFALTGSLRKHKRVHTGEKPYNCDICNKCFALSGCLKKHKRVHTGEKPYQCDICNKCFAIADSLKKHKRVHTGEKPYQCDICSKCFALPDSWRKHKHVHTGEKPYQCDTCMKCFAHSSQLRKHKLSHTGEKRIEHSDIDVGESKVEAPANFNLETKCSLKSEIKNTVRYNNTQTGENPYQCDICNKCFARADSWKKHQRVHTGEKPYQCDMCIKSFSQSNDLIKHKRTHSVEKPYRCDMCDRCFTQLGNLDRHKRRHTGDRRYQCRICNKSFIESYSLKVHMRLHTGEKPYQCDVCDKCFTHAASLSKHKLSHAGEKPNEYSDIDVGETKVEPPANFELETKSIDETNLKVEVKDTPIYDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-